miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 22055 0.7 0.526179
Target:  5'- -aAGGCGGaCGC-GCUCGCcaaGCUGCCCg -3'
miRNA:   3'- cgUCUGCCaGCGuUGGGCG---CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 146634 0.7 0.535512
Target:  5'- aCAGGCgcucGGcCGCcGCCCGCaCCGCCUc -3'
miRNA:   3'- cGUCUG----CCaGCGuUGGGCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 117356 0.7 0.544902
Target:  5'- cGCcccCGG-CGCcuCCCGCGgCGCCCg -3'
miRNA:   3'- -CGucuGCCaGCGuuGGGCGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 147661 0.7 0.544902
Target:  5'- cCGGugGGaagCGCGGCCgGgaGCCGCUCu -3'
miRNA:   3'- cGUCugCCa--GCGUUGGgCg-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 61110 0.7 0.544902
Target:  5'- -gAGAUGGugaugaggagcUCGCcuCCCcCGCCGCCCc -3'
miRNA:   3'- cgUCUGCC-----------AGCGuuGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 57321 0.7 0.554345
Target:  5'- cGUAGcgcCGGUgGCAcCCCcacccgccugugGCGCCGCCUg -3'
miRNA:   3'- -CGUCu--GCCAgCGUuGGG------------CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 146970 0.69 0.573369
Target:  5'- gGCAu-CGGgggCGCAcuccACCCGC-CUGCCCa -3'
miRNA:   3'- -CGUcuGCCa--GCGU----UGGGCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 156229 0.69 0.573369
Target:  5'- aGCAGGCGaucagccccccGUCGCucacgucguGGCCCGCGgucaCCaGCCCg -3'
miRNA:   3'- -CGUCUGC-----------CAGCG---------UUGGGCGC----GG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 19565 0.69 0.573369
Target:  5'- cGCGGucccacCGGgagccCGgGugCCGCGCgGCCCg -3'
miRNA:   3'- -CGUCu-----GCCa----GCgUugGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 135007 0.69 0.580065
Target:  5'- cGCAGGgGGgugagcaccaggCGCAGCUcgcccucggccagCGCGCgGCCCu -3'
miRNA:   3'- -CGUCUgCCa-----------GCGUUGG-------------GCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 131395 0.69 0.582939
Target:  5'- gGCGGGCaGGgCGCcgagAACgCCGCGCCcGUCCu -3'
miRNA:   3'- -CGUCUG-CCaGCG----UUG-GGCGCGG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 102589 0.69 0.582939
Target:  5'- --uGACGGgggaGCuGGCCCGCGCggcgcgCGCCCu -3'
miRNA:   3'- cguCUGCCag--CG-UUGGGCGCG------GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 57756 0.69 0.592541
Target:  5'- gGC-GACGGgggaGUAGCCCgGCGCCGguauCCCc -3'
miRNA:   3'- -CGuCUGCCag--CGUUGGG-CGCGGC----GGG- -5'
4037 3' -60.9 NC_001650.1 + 108955 0.69 0.592541
Target:  5'- aGCAGcugucCGuGUCcagGCAcgaguacuuuaACCCGCGCCuGCCCg -3'
miRNA:   3'- -CGUCu----GC-CAG---CGU-----------UGGGCGCGG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 153414 0.69 0.592541
Target:  5'- aGCucuCGGUCaGCAcGCgCaGCGCCGCCCc -3'
miRNA:   3'- -CGucuGCCAG-CGU-UGgG-CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 56999 0.69 0.592541
Target:  5'- gGCcauGuCGGUCaGCAuguCCUcCGCCGCCCg -3'
miRNA:   3'- -CGu--CuGCCAG-CGUu--GGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 56368 0.69 0.598315
Target:  5'- cCAGGCGcUCGCccacgggcgaaCCGgGCCGCCCu -3'
miRNA:   3'- cGUCUGCcAGCGuug--------GGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 41503 0.69 0.602169
Target:  5'- -uGGucuCGGcCGCGcCgCCGcCGCCGCCCg -3'
miRNA:   3'- cgUCu--GCCaGCGUuG-GGC-GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 109340 0.69 0.602169
Target:  5'- -aAGAUGuUCaGCAGCUCGUGCUGCUCg -3'
miRNA:   3'- cgUCUGCcAG-CGUUGGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 60537 0.69 0.608921
Target:  5'- gGCGG-CGGUCuGUuuGguguuggggaacauGCCCGCGUCGCUCa -3'
miRNA:   3'- -CGUCuGCCAG-CG--U--------------UGGGCGCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.