Results 101 - 120 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 53226 | 0.68 | 0.640815 |
Target: 5'- aUAGAgGGccCGCGACagggGCGCCGCCUc -3' miRNA: 3'- cGUCUgCCa-GCGUUGgg--CGCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 128236 | 0.68 | 0.64758 |
Target: 5'- cGCuGAUGGgCGCccugcgcgccuacgGGCCCGUGCCcgagggggugggGCCCa -3' miRNA: 3'- -CGuCUGCCaGCG--------------UUGGGCGCGG------------CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 28445 | 0.68 | 0.650478 |
Target: 5'- gGCGGGUGGggGCGGCCgugcUGUGCCuGCCCg -3' miRNA: 3'- -CGUCUGCCagCGUUGG----GCGCGG-CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 62038 | 0.68 | 0.650478 |
Target: 5'- cGUGGAagUGGUCcaGCAgguuGCCCaggGCGCCGCCg -3' miRNA: 3'- -CGUCU--GCCAG--CGU----UGGG---CGCGGCGGg -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 117118 | 0.68 | 0.650478 |
Target: 5'- -gGGGCGGggGCAGCuuGgagaCGUCGCCCc -3' miRNA: 3'- cgUCUGCCagCGUUGggC----GCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 132895 | 0.68 | 0.659164 |
Target: 5'- aGCAGGucCGGUucucgacCGcCAGCuCCGCGugcCCGCCCu -3' miRNA: 3'- -CGUCU--GCCA-------GC-GUUG-GGCGC---GGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 81741 | 0.68 | 0.660128 |
Target: 5'- cGCGGugGGUacCGCcaccuCCUGgGCgGCCUg -3' miRNA: 3'- -CGUCugCCA--GCGuu---GGGCgCGgCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 134149 | 0.68 | 0.660128 |
Target: 5'- cCAGACcaaGGggGCGACCgCGgGCgGCCCu -3' miRNA: 3'- cGUCUG---CCagCGUUGG-GCgCGgCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 117706 | 0.68 | 0.660128 |
Target: 5'- uGUAGACGGcC---GCCCGCaCCGCCg -3' miRNA: 3'- -CGUCUGCCaGcguUGGGCGcGGCGGg -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 153291 | 0.68 | 0.660128 |
Target: 5'- cGCGGGCGGU-GCcaccGACCC-CGCCccuGUCCg -3' miRNA: 3'- -CGUCUGCCAgCG----UUGGGcGCGG---CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 66409 | 0.68 | 0.669758 |
Target: 5'- aGCAGGaGGgugUGCgGGCCCGUGgaGCCCg -3' miRNA: 3'- -CGUCUgCCa--GCG-UUGGGCGCggCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 132950 | 0.68 | 0.669758 |
Target: 5'- ---cGCGG-CGCGAgcccuccgguggUCCGCGCuCGCCCg -3' miRNA: 3'- cgucUGCCaGCGUU------------GGGCGCG-GCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 93357 | 0.68 | 0.669758 |
Target: 5'- aGCAccuGACGGggGCGGCCUuugggGCGCUGgCCa -3' miRNA: 3'- -CGU---CUGCCagCGUUGGG-----CGCGGCgGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 110759 | 0.68 | 0.67072 |
Target: 5'- gGCAGGCGaagcccgcguUCGCAggugccuggcgucggGCCCGUugugcuggcccuggGCCGCCCc -3' miRNA: 3'- -CGUCUGCc---------AGCGU---------------UGGGCG--------------CGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 95871 | 0.68 | 0.67936 |
Target: 5'- cGCAGGCccGUCaGgAcccuGCCCGCGuCCGCCUc -3' miRNA: 3'- -CGUCUGc-CAG-CgU----UGGGCGC-GGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 122664 | 0.68 | 0.67936 |
Target: 5'- cCAGGCGGUCaaggaGACCCuccuGgGCUGCCUg -3' miRNA: 3'- cGUCUGCCAGcg---UUGGG----CgCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 129053 | 0.67 | 0.688928 |
Target: 5'- -gAGGCGGUgGCcGCgCGCGaccCCGCCa -3' miRNA: 3'- cgUCUGCCAgCGuUGgGCGC---GGCGGg -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 77865 | 0.67 | 0.688928 |
Target: 5'- gGCAGAgGGUgGagaAGgCCGCGCUgGUCCu -3' miRNA: 3'- -CGUCUgCCAgCg--UUgGGCGCGG-CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 121455 | 0.67 | 0.694649 |
Target: 5'- aGCAGAucaccgucuuCGGgCGCcacuuuuacgaguGCCUGCGCCGCUg -3' miRNA: 3'- -CGUCU----------GCCaGCGu------------UGGGCGCGGCGGg -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 25370 | 0.67 | 0.697504 |
Target: 5'- -gAGGgGGUuaagagcCGCGACCCGCucCCGUCCc -3' miRNA: 3'- cgUCUgCCA-------GCGUUGGGCGc-GGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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