miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 30531 0.66 0.772224
Target:  5'- uGCuucGCGGagGCGGCCa-UGCUGCCCa -3'
miRNA:   3'- -CGuc-UGCCagCGUUGGgcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 81607 0.66 0.771338
Target:  5'- cGCGa--GGUCGCcgcacagGGCgCGCGCCGCgCg -3'
miRNA:   3'- -CGUcugCCAGCG-------UUGgGCGCGGCGgG- -5'
4037 3' -60.9 NC_001650.1 + 67546 0.66 0.763312
Target:  5'- aGCGGGCGG-----GCUCGCGCgCGCUCu -3'
miRNA:   3'- -CGUCUGCCagcguUGGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 114942 0.66 0.763312
Target:  5'- gGUGGACGGUCuu-GCUgGCcUCGCCCa -3'
miRNA:   3'- -CGUCUGCCAGcguUGGgCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 19407 0.66 0.763312
Target:  5'- cGCGGG-GGUCu--GCUCGCgGCCGCCg -3'
miRNA:   3'- -CGUCUgCCAGcguUGGGCG-CGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 117912 0.66 0.763312
Target:  5'- cGCAGAgguUGG-CGUAGCUgaugGCGuuGCCCu -3'
miRNA:   3'- -CGUCU---GCCaGCGUUGGg---CGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 118935 0.66 0.763312
Target:  5'- uGUAGGCGGuguagauaUCGUccauGAUCUcaGCgGCCGCCCa -3'
miRNA:   3'- -CGUCUGCC--------AGCG----UUGGG--CG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 100973 0.66 0.763312
Target:  5'- cGC-GAcCGcGUCGCAgagcuucucgacGCgCGCGaCCGCCCc -3'
miRNA:   3'- -CGuCU-GC-CAGCGU------------UGgGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 61908 0.66 0.763312
Target:  5'- -aAGGCGGcCGCGgcgGCCagcugcucgCGCGCCGCg- -3'
miRNA:   3'- cgUCUGCCaGCGU---UGG---------GCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 66450 0.66 0.763312
Target:  5'- -gGGAgGG-CGcCGACCgGCuGUCGCCCc -3'
miRNA:   3'- cgUCUgCCaGC-GUUGGgCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 100103 0.66 0.763312
Target:  5'- uGCGGACGGccUCGC-ACgC-CGCCGCg- -3'
miRNA:   3'- -CGUCUGCC--AGCGuUGgGcGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 117745 0.66 0.762415
Target:  5'- aGCAGAacuccaGGUCGgguucaggggcgaCAGCCgGuCGgCGCCCu -3'
miRNA:   3'- -CGUCUg-----CCAGC-------------GUUGGgC-GCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 68897 0.66 0.762415
Target:  5'- uGUAGACGGccaugCGCGGCggguacaCGUaccagcgcucuacGCCGCCCc -3'
miRNA:   3'- -CGUCUGCCa----GCGUUGg------GCG-------------CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 100547 0.66 0.760618
Target:  5'- cGCGGAUGaGaUCGCGcagggccucgucgcACCCGCcgGCCGCg- -3'
miRNA:   3'- -CGUCUGC-C-AGCGU--------------UGGGCG--CGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 41049 0.66 0.760618
Target:  5'- aGCAGAgGGUCucgcacguacacgaGCGAgUCC-CGCUGCCUg -3'
miRNA:   3'- -CGUCUgCCAG--------------CGUU-GGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 135602 0.66 0.757915
Target:  5'- cGCAcuCGG-CGCAcaccacagcuagccuGgcgCCCGCGCCGUCCc -3'
miRNA:   3'- -CGUcuGCCaGCGU---------------U---GGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 119102 0.66 0.754296
Target:  5'- uGUAGACGGggacggGCAugCCcagauGCGCgGCCg -3'
miRNA:   3'- -CGUCUGCCag----CGUugGG-----CGCGgCGGg -5'
4037 3' -60.9 NC_001650.1 + 93530 0.66 0.754296
Target:  5'- aGCGGcGCGGUgcccugCGUggUCUGCGUgggguCGCCCa -3'
miRNA:   3'- -CGUC-UGCCA------GCGuuGGGCGCG-----GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 76013 0.66 0.754296
Target:  5'- cGCGGACucgaGGUCGUca--CGCGCCagcuucuuGCCCa -3'
miRNA:   3'- -CGUCUG----CCAGCGuuggGCGCGG--------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 47986 0.66 0.753389
Target:  5'- -aAGAUGG-CGCAggacuacGCCCcgGgGCCGCUCa -3'
miRNA:   3'- cgUCUGCCaGCGU-------UGGG--CgCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.