miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 12177 0.66 0.745184
Target:  5'- -aAGAUGGcCGCcuccccACCaCGUgGCCGCCCc -3'
miRNA:   3'- cgUCUGCCaGCGu-----UGG-GCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 117715 0.66 0.745184
Target:  5'- -gAGACGGUcCGgGGCCUGCGgUGCa- -3'
miRNA:   3'- cgUCUGCCA-GCgUUGGGCGCgGCGgg -5'
4037 3' -60.9 NC_001650.1 + 118736 0.66 0.745184
Target:  5'- uGCAGcGCGcucUCGUAcaccGCCCccCGCCGCCCc -3'
miRNA:   3'- -CGUC-UGCc--AGCGU----UGGGc-GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 75332 0.66 0.745184
Target:  5'- cGCAGGCGGUga-GGCgCGCGUCcuccauGCCCu -3'
miRNA:   3'- -CGUCUGCCAgcgUUGgGCGCGG------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 178884 0.66 0.745184
Target:  5'- -aAGAUGGcCGCcuccccACCaCGUgGCCGCCCc -3'
miRNA:   3'- cgUCUGCCaGCGu-----UGG-GCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 94352 0.66 0.745184
Target:  5'- -gGGACucUCGCcacGACCCGCaCCGCCUc -3'
miRNA:   3'- cgUCUGccAGCG---UUGGGCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 38475 0.66 0.745184
Target:  5'- gGCGGACcugccCGCcauGGCCC-UGCCGCCCu -3'
miRNA:   3'- -CGUCUGcca--GCG---UUGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 115127 0.67 0.735984
Target:  5'- aCAGACGcUCGCcucCCUGUGCgCGCUCc -3'
miRNA:   3'- cGUCUGCcAGCGuu-GGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 41581 0.67 0.735984
Target:  5'- cGCAG-CaGcCGCAGCCCccucCGCCGgCCu -3'
miRNA:   3'- -CGUCuGcCaGCGUUGGGc---GCGGCgGG- -5'
4037 3' -60.9 NC_001650.1 + 158375 0.67 0.726703
Target:  5'- uCAGcGCGGUgGCGGguaccucuccccUCUGgGCCGCCCc -3'
miRNA:   3'- cGUC-UGCCAgCGUU------------GGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 158000 0.67 0.726703
Target:  5'- cGUGGACGGcguccUCGUAGCCCGagGCCacGCUg -3'
miRNA:   3'- -CGUCUGCC-----AGCGUUGGGCg-CGG--CGGg -5'
4037 3' -60.9 NC_001650.1 + 109431 0.67 0.726703
Target:  5'- gGUAGAUGGcCagguuauccaGCAgGCCCaGCauGCCGCCCg -3'
miRNA:   3'- -CGUCUGCCaG----------CGU-UGGG-CG--CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 82376 0.67 0.726703
Target:  5'- aUAGGCGGUCGCcugcuggagcACCUGCuGCUGCggCCu -3'
miRNA:   3'- cGUCUGCCAGCGu---------UGGGCG-CGGCG--GG- -5'
4037 3' -60.9 NC_001650.1 + 52386 0.67 0.726703
Target:  5'- gGguGAC-GUCgGCGGCCgGCcaCCGCCCc -3'
miRNA:   3'- -CguCUGcCAG-CGUUGGgCGc-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 121269 0.67 0.725771
Target:  5'- uGCAGACGGcCugcuccaacaagaGCcACCUGuCcCCGCCCg -3'
miRNA:   3'- -CGUCUGCCaG-------------CGuUGGGC-GcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 29054 0.67 0.721099
Target:  5'- cGCGGGgGGUgGCcgacgugggggaguACCUggGCGCgGCCCg -3'
miRNA:   3'- -CGUCUgCCAgCGu-------------UGGG--CGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 162537 0.67 0.717349
Target:  5'- -uGGACaGGgUGCAGggccccCCCGCGCCGUCg -3'
miRNA:   3'- cgUCUG-CCaGCGUU------GGGCGCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 173974 0.67 0.717349
Target:  5'- uGCAGugGGUaGCc-CCCauuGgGCCGCCg -3'
miRNA:   3'- -CGUCugCCAgCGuuGGG---CgCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 7267 0.67 0.717349
Target:  5'- uGCAGugGGUaGCc-CCCauuGgGCCGCCg -3'
miRNA:   3'- -CGUCugCCAgCGuuGGG---CgCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 81738 0.67 0.717349
Target:  5'- uGCAGuACGaGUC-CAGCaCCGCGCUGUa- -3'
miRNA:   3'- -CGUC-UGC-CAGcGUUG-GGCGCGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.