Results 61 - 80 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 111523 | 0.67 | 0.70793 |
Target: 5'- --cGugGGUgGCGA-CCGC-CUGCCCa -3' miRNA: 3'- cguCugCCAgCGUUgGGCGcGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 90022 | 0.67 | 0.70793 |
Target: 5'- cCGGuCGGcCGgAGCgCGCGCC-CCCg -3' miRNA: 3'- cGUCuGCCaGCgUUGgGCGCGGcGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 160465 | 0.67 | 0.70793 |
Target: 5'- uCGGGCGGgucucCGCccCCCGCG-CGCCg -3' miRNA: 3'- cGUCUGCCa----GCGuuGGGCGCgGCGGg -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 108918 | 0.67 | 0.706039 |
Target: 5'- cGCAGGgGGgCGCuguuccagguuuGCgCGCGCCucGCCCu -3' miRNA: 3'- -CGUCUgCCaGCGu-----------UGgGCGCGG--CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 70978 | 0.67 | 0.698454 |
Target: 5'- cCAGGCuGGUgGaCAACCCcaacGCGaCGCCCu -3' miRNA: 3'- cGUCUG-CCAgC-GUUGGG----CGCgGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 108785 | 0.67 | 0.698454 |
Target: 5'- cGCGG-CGcUCGCuuCCuCGC-CCGCCCc -3' miRNA: 3'- -CGUCuGCcAGCGuuGG-GCGcGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 117287 | 0.67 | 0.698454 |
Target: 5'- -aGGACGc-CGCcAUCCGCGCCccgGCCCc -3' miRNA: 3'- cgUCUGCcaGCGuUGGGCGCGG---CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 83759 | 0.67 | 0.697504 |
Target: 5'- --uGAgGGUCaGguACCCcggguacGCGCCGUCCg -3' miRNA: 3'- cguCUgCCAG-CguUGGG-------CGCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 25370 | 0.67 | 0.697504 |
Target: 5'- -gAGGgGGUuaagagcCGCGACCCGCucCCGUCCc -3' miRNA: 3'- cgUCUgCCA-------GCGUUGGGCGc-GGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 121455 | 0.67 | 0.694649 |
Target: 5'- aGCAGAucaccgucuuCGGgCGCcacuuuuacgaguGCCUGCGCCGCUg -3' miRNA: 3'- -CGUCU----------GCCaGCGu------------UGGGCGCGGCGGg -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 129053 | 0.67 | 0.688928 |
Target: 5'- -gAGGCGGUgGCcGCgCGCGaccCCGCCa -3' miRNA: 3'- cgUCUGCCAgCGuUGgGCGC---GGCGGg -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 77865 | 0.67 | 0.688928 |
Target: 5'- gGCAGAgGGUgGagaAGgCCGCGCUgGUCCu -3' miRNA: 3'- -CGUCUgCCAgCg--UUgGGCGCGG-CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 95871 | 0.68 | 0.67936 |
Target: 5'- cGCAGGCccGUCaGgAcccuGCCCGCGuCCGCCUc -3' miRNA: 3'- -CGUCUGc-CAG-CgU----UGGGCGC-GGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 122664 | 0.68 | 0.67936 |
Target: 5'- cCAGGCGGUCaaggaGACCCuccuGgGCUGCCUg -3' miRNA: 3'- cGUCUGCCAGcg---UUGGG----CgCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 110759 | 0.68 | 0.67072 |
Target: 5'- gGCAGGCGaagcccgcguUCGCAggugccuggcgucggGCCCGUugugcuggcccuggGCCGCCCc -3' miRNA: 3'- -CGUCUGCc---------AGCGU---------------UGGGCG--------------CGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 66409 | 0.68 | 0.669758 |
Target: 5'- aGCAGGaGGgugUGCgGGCCCGUGgaGCCCg -3' miRNA: 3'- -CGUCUgCCa--GCG-UUGGGCGCggCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 132950 | 0.68 | 0.669758 |
Target: 5'- ---cGCGG-CGCGAgcccuccgguggUCCGCGCuCGCCCg -3' miRNA: 3'- cgucUGCCaGCGUU------------GGGCGCG-GCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 93357 | 0.68 | 0.669758 |
Target: 5'- aGCAccuGACGGggGCGGCCUuugggGCGCUGgCCa -3' miRNA: 3'- -CGU---CUGCCagCGUUGGG-----CGCGGCgGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 134149 | 0.68 | 0.660128 |
Target: 5'- cCAGACcaaGGggGCGACCgCGgGCgGCCCu -3' miRNA: 3'- cGUCUG---CCagCGUUGG-GCgCGgCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 153291 | 0.68 | 0.660128 |
Target: 5'- cGCGGGCGGU-GCcaccGACCC-CGCCccuGUCCg -3' miRNA: 3'- -CGUCUGCCAgCG----UUGGGcGCGG---CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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