miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 134149 0.68 0.660128
Target:  5'- cCAGACcaaGGggGCGACCgCGgGCgGCCCu -3'
miRNA:   3'- cGUCUG---CCagCGUUGG-GCgCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 81741 0.68 0.660128
Target:  5'- cGCGGugGGUacCGCcaccuCCUGgGCgGCCUg -3'
miRNA:   3'- -CGUCugCCA--GCGuu---GGGCgCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 132895 0.68 0.659164
Target:  5'- aGCAGGucCGGUucucgacCGcCAGCuCCGCGugcCCGCCCu -3'
miRNA:   3'- -CGUCU--GCCA-------GC-GUUG-GGCGC---GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 62038 0.68 0.650478
Target:  5'- cGUGGAagUGGUCcaGCAgguuGCCCaggGCGCCGCCg -3'
miRNA:   3'- -CGUCU--GCCAG--CGU----UGGG---CGCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 28445 0.68 0.650478
Target:  5'- gGCGGGUGGggGCGGCCgugcUGUGCCuGCCCg -3'
miRNA:   3'- -CGUCUGCCagCGUUGG----GCGCGG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 117118 0.68 0.650478
Target:  5'- -gGGGCGGggGCAGCuuGgagaCGUCGCCCc -3'
miRNA:   3'- cgUCUGCCagCGUUGggC----GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 128236 0.68 0.64758
Target:  5'- cGCuGAUGGgCGCccugcgcgccuacgGGCCCGUGCCcgagggggugggGCCCa -3'
miRNA:   3'- -CGuCUGCCaGCG--------------UUGGGCGCGG------------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 126962 0.68 0.640815
Target:  5'- gGCAuGCGGggCGCAGCa-GCaacaGCCGCCCc -3'
miRNA:   3'- -CGUcUGCCa-GCGUUGggCG----CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 53226 0.68 0.640815
Target:  5'- aUAGAgGGccCGCGACagggGCGCCGCCUc -3'
miRNA:   3'- cGUCUgCCa-GCGUUGgg--CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 118049 0.68 0.631146
Target:  5'- gGCAGGCuGGaCGaguaCAGCCCGUGgCGCaCCa -3'
miRNA:   3'- -CGUCUG-CCaGC----GUUGGGCGCgGCG-GG- -5'
4037 3' -60.9 NC_001650.1 + 136461 0.68 0.631146
Target:  5'- cGCAGGCccUCGCAcaggGCCCGCaUCaGCCCg -3'
miRNA:   3'- -CGUCUGccAGCGU----UGGGCGcGG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 76698 0.68 0.631146
Target:  5'- uCAGcCGcGUCGCcgUCCGUGCCGCa- -3'
miRNA:   3'- cGUCuGC-CAGCGuuGGGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 56659 0.68 0.631146
Target:  5'- -uGGGCGGUCGCccCCCuCGCC-CCUu -3'
miRNA:   3'- cgUCUGCCAGCGuuGGGcGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 50056 0.68 0.631146
Target:  5'- cGC-GugGGgaggGCcGCCCGCGgUCGCCCc -3'
miRNA:   3'- -CGuCugCCag--CGuUGGGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 129377 0.68 0.631146
Target:  5'- cCAGugGGggUGCAgaacccaguACCCGCGCgaGCCg -3'
miRNA:   3'- cGUCugCCa-GCGU---------UGGGCGCGg-CGGg -5'
4037 3' -60.9 NC_001650.1 + 122727 0.69 0.621478
Target:  5'- uGCAGGCGGccaggaaaagaUgGCcGCCaGCGUCGCCUu -3'
miRNA:   3'- -CGUCUGCC-----------AgCGuUGGgCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 110538 0.69 0.621478
Target:  5'- aGCAG-CGGgcgCGCGAgCaacaGCCGCCCc -3'
miRNA:   3'- -CGUCuGCCa--GCGUUgGgcg-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 102443 0.69 0.621478
Target:  5'- uGCAGcCGugcGUCGU-GCCCGUccagcagcagGCCGCCCa -3'
miRNA:   3'- -CGUCuGC---CAGCGuUGGGCG----------CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 129094 0.69 0.621478
Target:  5'- cGC-GACGGgcUCGCu-CCCGCGCUuCCUg -3'
miRNA:   3'- -CGuCUGCC--AGCGuuGGGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 124373 0.69 0.621478
Target:  5'- cGCcGGgGGUCGCGcCCaugaGCGaggaCCGCCCg -3'
miRNA:   3'- -CGuCUgCCAGCGUuGGg---CGC----GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.