miRNA display CGI


Results 1 - 20 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 7267 0.67 0.717349
Target:  5'- uGCAGugGGUaGCc-CCCauuGgGCCGCCg -3'
miRNA:   3'- -CGUCugCCAgCGuuGGG---CgCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 12177 0.66 0.745184
Target:  5'- -aAGAUGGcCGCcuccccACCaCGUgGCCGCCCc -3'
miRNA:   3'- cgUCUGCCaGCGu-----UGG-GCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 19407 0.66 0.763312
Target:  5'- cGCGGG-GGUCu--GCUCGCgGCCGCCg -3'
miRNA:   3'- -CGUCUgCCAGcguUGGGCG-CGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 19565 0.69 0.573369
Target:  5'- cGCGGucccacCGGgagccCGgGugCCGCGCgGCCCg -3'
miRNA:   3'- -CGUCu-----GCCa----GCgUugGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 20688 0.71 0.480525
Target:  5'- aCGGGgGGUCugGugCCGgGCCGCCCc -3'
miRNA:   3'- cGUCUgCCAGcgUugGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 21174 0.72 0.436889
Target:  5'- gGCGGGCGG-CGCGGgUUGCGaCCGUCUg -3'
miRNA:   3'- -CGUCUGCCaGCGUUgGGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 22055 0.7 0.526179
Target:  5'- -aAGGCGGaCGC-GCUCGCcaaGCUGCCCg -3'
miRNA:   3'- cgUCUGCCaGCGuUGGGCG---CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 22476 0.71 0.498569
Target:  5'- -uGGACGGgagCGCG----GCGCCGCCCg -3'
miRNA:   3'- cgUCUGCCa--GCGUugggCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 24508 0.75 0.314162
Target:  5'- gGguGGCGGUCcuGCuccuGCCCG-GCUGCCCc -3'
miRNA:   3'- -CguCUGCCAG--CGu---UGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 25370 0.67 0.697504
Target:  5'- -gAGGgGGUuaagagcCGCGACCCGCucCCGUCCc -3'
miRNA:   3'- cgUCUgCCA-------GCGUUGGGCGc-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 27412 0.66 0.79826
Target:  5'- aGCAGGCGGU-GCAcgugcACUCGCaGCUGUUUu -3'
miRNA:   3'- -CGUCUGCCAgCGU-----UGGGCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 28445 0.68 0.650478
Target:  5'- gGCGGGUGGggGCGGCCgugcUGUGCCuGCCCg -3'
miRNA:   3'- -CGUCUGCCagCGUUGG----GCGCGG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 29054 0.67 0.721099
Target:  5'- cGCGGGgGGUgGCcgacgugggggaguACCUggGCGCgGCCCg -3'
miRNA:   3'- -CGUCUgCCAgCGu-------------UGGG--CGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 30531 0.66 0.772224
Target:  5'- uGCuucGCGGagGCGGCCa-UGCUGCCCa -3'
miRNA:   3'- -CGuc-UGCCagCGUUGGgcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 30920 0.72 0.411826
Target:  5'- cGCGGACaggggcggGGUCGUGgcaccGCCCGCGCgaCGUCCu -3'
miRNA:   3'- -CGUCUG--------CCAGCGU-----UGGGCGCG--GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 35801 0.66 0.79826
Target:  5'- uGCGcGGCGGcCGU--CCCGCGCCaggggggcgcgGCCa -3'
miRNA:   3'- -CGU-CUGCCaGCGuuGGGCGCGG-----------CGGg -5'
4037 3' -60.9 NC_001650.1 + 37715 0.71 0.484109
Target:  5'- gGCAGAUugucagagaugacugGGuuucugggcUCGCGgcGCCCGgGCCGCCUa -3'
miRNA:   3'- -CGUCUG---------------CC---------AGCGU--UGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 38475 0.66 0.745184
Target:  5'- gGCGGACcugccCGCcauGGCCC-UGCCGCCCu -3'
miRNA:   3'- -CGUCUGcca--GCG---UUGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 41049 0.66 0.760618
Target:  5'- aGCAGAgGGUCucgcacguacacgaGCGAgUCC-CGCUGCCUg -3'
miRNA:   3'- -CGUCUgCCAG--------------CGUU-GGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 41157 0.74 0.349544
Target:  5'- aGCAGGCGGagcgccucggCGCccUCCGCGUgGCCCg -3'
miRNA:   3'- -CGUCUGCCa---------GCGuuGGGCGCGgCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.