miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 41212 0.66 0.789705
Target:  5'- cGCAGAUGGagGCggUCC-UGuuGCUCu -3'
miRNA:   3'- -CGUCUGCCagCGuuGGGcGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 41503 0.69 0.602169
Target:  5'- -uGGucuCGGcCGCGcCgCCGcCGCCGCCCg -3'
miRNA:   3'- cgUCu--GCCaGCGUuG-GGC-GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 41581 0.67 0.735984
Target:  5'- cGCAG-CaGcCGCAGCCCccucCGCCGgCCu -3'
miRNA:   3'- -CGUCuGcCaGCGUUGGGc---GCGGCgGG- -5'
4037 3' -60.9 NC_001650.1 + 47986 0.66 0.753389
Target:  5'- -aAGAUGG-CGCAggacuacGCCCcgGgGCCGCUCa -3'
miRNA:   3'- cgUCUGCCaGCGU-------UGGG--CgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 49894 0.76 0.263316
Target:  5'- uCAGGCGG--GCGACCUG-GCCGCCCu -3'
miRNA:   3'- cGUCUGCCagCGUUGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 50056 0.68 0.631146
Target:  5'- cGC-GugGGgaggGCcGCCCGCGgUCGCCCc -3'
miRNA:   3'- -CGuCugCCag--CGuUGGGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 50371 0.66 0.789705
Target:  5'- aGCAGAgGGUgaccUGUggUCUGgaGCCGCCg -3'
miRNA:   3'- -CGUCUgCCA----GCGuuGGGCg-CGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 50557 0.75 0.314162
Target:  5'- gGCGGugGaGUgcccgCGCAACCCGgucaggGCCGCCCc -3'
miRNA:   3'- -CGUCugC-CA-----GCGUUGGGCg-----CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 51257 0.71 0.507704
Target:  5'- cGCGGGCGaG-CGCGgaccaccggaggGCUCGCGCCGCg- -3'
miRNA:   3'- -CGUCUGC-CaGCGU------------UGGGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 51671 0.72 0.436889
Target:  5'- cGgGGGCGcGUCGCccggggGGCgCGCGuuGCCCa -3'
miRNA:   3'- -CgUCUGC-CAGCG------UUGgGCGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 52386 0.67 0.726703
Target:  5'- gGguGAC-GUCgGCGGCCgGCcaCCGCCCc -3'
miRNA:   3'- -CguCUGcCAG-CGUUGGgCGc-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 52583 0.72 0.436889
Target:  5'- gGCAGGCGGcCGcCAGCUCGgGCCgggugGCCa -3'
miRNA:   3'- -CGUCUGCCaGC-GUUGGGCgCGG-----CGGg -5'
4037 3' -60.9 NC_001650.1 + 52813 0.71 0.471624
Target:  5'- cGCAgGACGGgCGCGgcguucucggcGCCCuGC-CCGCCCu -3'
miRNA:   3'- -CGU-CUGCCaGCGU-----------UGGG-CGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 53197 0.72 0.454076
Target:  5'- cCGGAgccCGGcUCGCGuCCCGgGCgGCCCg -3'
miRNA:   3'- cGUCU---GCC-AGCGUuGGGCgCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 53226 0.68 0.640815
Target:  5'- aUAGAgGGccCGCGACagggGCGCCGCCUc -3'
miRNA:   3'- cGUCUgCCa-GCGUUGgg--CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 54170 0.71 0.495843
Target:  5'- gGCGGAUucuagGGUC-CAGucgccgguggagcuCCCGgGCCGCCCa -3'
miRNA:   3'- -CGUCUG-----CCAGcGUU--------------GGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 54214 0.76 0.263316
Target:  5'- gGCccGCGGccUCGU--CCCGCGCCGCCCu -3'
miRNA:   3'- -CGucUGCC--AGCGuuGGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 55605 0.75 0.314162
Target:  5'- -gAGACGGUCagguaGCGGCgCCGCGCguuUGCCCu -3'
miRNA:   3'- cgUCUGCCAG-----CGUUG-GGCGCG---GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 56281 0.69 0.621478
Target:  5'- -aGGACGGggggggUGguGCCUgGCGCgCGCCCc -3'
miRNA:   3'- cgUCUGCCa-----GCguUGGG-CGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 56368 0.69 0.598315
Target:  5'- cCAGGCGcUCGCccacgggcgaaCCGgGCCGCCCu -3'
miRNA:   3'- cGUCUGCcAGCGuug--------GGCgCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.