miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 66409 0.68 0.669758
Target:  5'- aGCAGGaGGgugUGCgGGCCCGUGgaGCCCg -3'
miRNA:   3'- -CGUCUgCCa--GCG-UUGGGCGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 66450 0.66 0.763312
Target:  5'- -gGGAgGG-CGcCGACCgGCuGUCGCCCc -3'
miRNA:   3'- cgUCUgCCaGC-GUUGGgCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 66721 0.74 0.356952
Target:  5'- -aGGACGGUguUGUAGCUCGCGgCGCCg -3'
miRNA:   3'- cgUCUGCCA--GCGUUGGGCGCgGCGGg -5'
4037 3' -60.9 NC_001650.1 + 67546 0.66 0.763312
Target:  5'- aGCGGGCGG-----GCUCGCGCgCGCUCu -3'
miRNA:   3'- -CGUCUGCCagcguUGGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 68843 0.72 0.436889
Target:  5'- uCGGACGGga-CGugCCGCGCCccggGCCCa -3'
miRNA:   3'- cGUCUGCCagcGUugGGCGCGG----CGGG- -5'
4037 3' -60.9 NC_001650.1 + 68897 0.66 0.762415
Target:  5'- uGUAGACGGccaugCGCGGCggguacaCGUaccagcgcucuacGCCGCCCc -3'
miRNA:   3'- -CGUCUGCCa----GCGUUGg------GCG-------------CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 70978 0.67 0.698454
Target:  5'- cCAGGCuGGUgGaCAACCCcaacGCGaCGCCCu -3'
miRNA:   3'- cGUCUG-CCAgC-GUUGGG----CGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 72702 0.71 0.462806
Target:  5'- gGCAGGCGGUCGCcACCCaCGagaggGCCa -3'
miRNA:   3'- -CGUCUGCCAGCGuUGGGcGCgg---CGGg -5'
4037 3' -60.9 NC_001650.1 + 72775 0.71 0.471624
Target:  5'- gGCAgGGCGG--GCuGGCCuCGCGCCGCCUc -3'
miRNA:   3'- -CGU-CUGCCagCG-UUGG-GCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 73676 0.69 0.611816
Target:  5'- cGgGGGCGGcUGUuGCUCGCGC-GCCCg -3'
miRNA:   3'- -CgUCUGCCaGCGuUGGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 75332 0.66 0.745184
Target:  5'- cGCAGGCGGUga-GGCgCGCGUCcuccauGCCCu -3'
miRNA:   3'- -CGUCUGCCAgcgUUGgGCGCGG------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 76013 0.66 0.754296
Target:  5'- cGCGGACucgaGGUCGUca--CGCGCCagcuucuuGCCCa -3'
miRNA:   3'- -CGUCUG----CCAGCGuuggGCGCGG--------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 76698 0.68 0.631146
Target:  5'- uCAGcCGcGUCGCcgUCCGUGCCGCa- -3'
miRNA:   3'- cGUCuGC-CAGCGuuGGGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 77129 0.74 0.321016
Target:  5'- -uGGGUGGUCGCGgcgGCCC-CGUCGCCCa -3'
miRNA:   3'- cgUCUGCCAGCGU---UGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 77865 0.67 0.688928
Target:  5'- gGCAGAgGGUgGagaAGgCCGCGCUgGUCCu -3'
miRNA:   3'- -CGUCUgCCAgCg--UUgGGCGCGG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 78229 0.75 0.314162
Target:  5'- uGCAGGuacaGGUCGUAcCCgGCGUCGUCCg -3'
miRNA:   3'- -CGUCUg---CCAGCGUuGGgCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 78783 0.71 0.499479
Target:  5'- gGCAG-CGGggacgagaucgccgcCGCGACCgGCGCUcgGCCCu -3'
miRNA:   3'- -CGUCuGCCa--------------GCGUUGGgCGCGG--CGGG- -5'
4037 3' -60.9 NC_001650.1 + 81607 0.66 0.771338
Target:  5'- cGCGa--GGUCGCcgcacagGGCgCGCGCCGCgCg -3'
miRNA:   3'- -CGUcugCCAGCG-------UUGgGCGCGGCGgG- -5'
4037 3' -60.9 NC_001650.1 + 81738 0.67 0.717349
Target:  5'- uGCAGuACGaGUC-CAGCaCCGCGCUGUa- -3'
miRNA:   3'- -CGUC-UGC-CAGcGUUG-GGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 81741 0.68 0.660128
Target:  5'- cGCGGugGGUacCGCcaccuCCUGgGCgGCCUg -3'
miRNA:   3'- -CGUCugCCA--GCGuu---GGGCgCGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.