miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 82376 0.67 0.726703
Target:  5'- aUAGGCGGUCGCcugcuggagcACCUGCuGCUGCggCCu -3'
miRNA:   3'- cGUCUGCCAGCGu---------UGGGCG-CGGCG--GG- -5'
4037 3' -60.9 NC_001650.1 + 83759 0.67 0.697504
Target:  5'- --uGAgGGUCaGguACCCcggguacGCGCCGUCCg -3'
miRNA:   3'- cguCUgCCAG-CguUGGG-------CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 86002 0.66 0.789705
Target:  5'- cGCuAGACaG-CGCcugcgagauACCCGUGCUGCUCa -3'
miRNA:   3'- -CG-UCUGcCaGCGu--------UGGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 90022 0.67 0.70793
Target:  5'- cCGGuCGGcCGgAGCgCGCGCC-CCCg -3'
miRNA:   3'- cGUCuGCCaGCgUUGgGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 90688 0.76 0.275368
Target:  5'- cGCAGACca-CGCAggGCaCCGCGCCGCUCu -3'
miRNA:   3'- -CGUCUGccaGCGU--UG-GGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 93357 0.68 0.669758
Target:  5'- aGCAccuGACGGggGCGGCCUuugggGCGCUGgCCa -3'
miRNA:   3'- -CGU---CUGCCagCGUUGGG-----CGCGGCgGG- -5'
4037 3' -60.9 NC_001650.1 + 93530 0.66 0.754296
Target:  5'- aGCGGcGCGGUgcccugCGUggUCUGCGUgggguCGCCCa -3'
miRNA:   3'- -CGUC-UGCCA------GCGuuGGGCGCG-----GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 94352 0.66 0.745184
Target:  5'- -gGGACucUCGCcacGACCCGCaCCGCCUc -3'
miRNA:   3'- cgUCUGccAGCG---UUGGGCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 95128 0.73 0.403671
Target:  5'- gGUGGGCGGUCGUccCCCGCGacgaGCCa -3'
miRNA:   3'- -CGUCUGCCAGCGuuGGGCGCgg--CGGg -5'
4037 3' -60.9 NC_001650.1 + 95219 0.66 0.772224
Target:  5'- -gGGGCGGgaagCGCGACCCcuCGCgGCaggCCg -3'
miRNA:   3'- cgUCUGCCa---GCGUUGGGc-GCGgCG---GG- -5'
4037 3' -60.9 NC_001650.1 + 95464 0.7 0.516909
Target:  5'- cGCAGGCGcGUCgGCcugcCCCGCuuGCCGgCCg -3'
miRNA:   3'- -CGUCUGC-CAG-CGuu--GGGCG--CGGCgGG- -5'
4037 3' -60.9 NC_001650.1 + 95871 0.68 0.67936
Target:  5'- cGCAGGCccGUCaGgAcccuGCCCGCGuCCGCCUc -3'
miRNA:   3'- -CGUCUGc-CAG-CgU----UGGGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 97430 0.71 0.498569
Target:  5'- aGCAGAucuucgUGGcCGcCAACCUGCGCUcCCCg -3'
miRNA:   3'- -CGUCU------GCCaGC-GUUGGGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 98225 0.71 0.498569
Target:  5'- cGCAGGCGcuGUCuaGCGugCCGCGgCC-CCCg -3'
miRNA:   3'- -CGUCUGC--CAG--CGUugGGCGC-GGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 100103 0.66 0.763312
Target:  5'- uGCGGACGGccUCGC-ACgC-CGCCGCg- -3'
miRNA:   3'- -CGUCUGCC--AGCGuUGgGcGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 100547 0.66 0.760618
Target:  5'- cGCGGAUGaGaUCGCGcagggccucgucgcACCCGCcgGCCGCg- -3'
miRNA:   3'- -CGUCUGC-C-AGCGU--------------UGGGCG--CGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 100973 0.66 0.763312
Target:  5'- cGC-GAcCGcGUCGCAgagcuucucgacGCgCGCGaCCGCCCc -3'
miRNA:   3'- -CGuCU-GC-CAGCGU------------UGgGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 102249 0.73 0.36447
Target:  5'- cCAGACGG-CGCAGCCgGCGCagguGCUg -3'
miRNA:   3'- cGUCUGCCaGCGUUGGgCGCGg---CGGg -5'
4037 3' -60.9 NC_001650.1 + 102443 0.69 0.621478
Target:  5'- uGCAGcCGugcGUCGU-GCCCGUccagcagcagGCCGCCCa -3'
miRNA:   3'- -CGUCuGC---CAGCGuUGGGCG----------CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 102552 0.66 0.772224
Target:  5'- -gGGACGGgaagggaCGUu-CCCGUGaCGCCCg -3'
miRNA:   3'- cgUCUGCCa------GCGuuGGGCGCgGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.