miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 178884 0.66 0.745184
Target:  5'- -aAGAUGGcCGCcuccccACCaCGUgGCCGCCCc -3'
miRNA:   3'- cgUCUGCCaGCGu-----UGG-GCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 173974 0.67 0.717349
Target:  5'- uGCAGugGGUaGCc-CCCauuGgGCCGCCg -3'
miRNA:   3'- -CGUCugCCAgCGuuGGG---CgCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 164810 0.66 0.78015
Target:  5'- cGCcGGCGGcCGCGAgcagaccCCCGCGgcaaaCGUCCc -3'
miRNA:   3'- -CGuCUGCCaGCGUU-------GGGCGCg----GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 164613 0.74 0.334345
Target:  5'- cGCAGGC---UGCAGCCCGagcggaaCGCCGCCCc -3'
miRNA:   3'- -CGUCUGccaGCGUUGGGC-------GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 163041 1.13 0.000743
Target:  5'- cGCAGACGGUCGCAACCCGCGCCGCCCg -3'
miRNA:   3'- -CGUCUGCCAGCGUUGGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 162537 0.67 0.717349
Target:  5'- -uGGACaGGgUGCAGggccccCCCGCGCCGUCg -3'
miRNA:   3'- cgUCUG-CCaGCGUU------GGGCGCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 160465 0.67 0.70793
Target:  5'- uCGGGCGGgucucCGCccCCCGCG-CGCCg -3'
miRNA:   3'- cGUCUGCCa----GCGuuGGGCGCgGCGGg -5'
4037 3' -60.9 NC_001650.1 + 158375 0.67 0.726703
Target:  5'- uCAGcGCGGUgGCGGguaccucuccccUCUGgGCCGCCCc -3'
miRNA:   3'- cGUC-UGCCAgCGUU------------GGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 158000 0.67 0.726703
Target:  5'- cGUGGACGGcguccUCGUAGCCCGagGCCacGCUg -3'
miRNA:   3'- -CGUCUGCC-----AGCGUUGGGCg-CGG--CGGg -5'
4037 3' -60.9 NC_001650.1 + 157571 0.73 0.39562
Target:  5'- gGCAGcuuggagaGGUa-CAGCaCCGCGCCGCCCc -3'
miRNA:   3'- -CGUCug------CCAgcGUUG-GGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 156229 0.69 0.573369
Target:  5'- aGCAGGCGaucagccccccGUCGCucacgucguGGCCCGCGgucaCCaGCCCg -3'
miRNA:   3'- -CGUCUGC-----------CAGCG---------UUGGGCGC----GG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 155812 0.72 0.436889
Target:  5'- uGUAGAgGGUCaGCuccccGCCCGCGCacgCGUCCu -3'
miRNA:   3'- -CGUCUgCCAG-CGu----UGGGCGCG---GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 155776 0.7 0.526179
Target:  5'- aCAGcACGGcCGCc-CCCaccCGCCGCCCg -3'
miRNA:   3'- cGUC-UGCCaGCGuuGGGc--GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 155042 0.66 0.781024
Target:  5'- gGUAGGCGGccgaggggUCGCAgagcagGCCCagGUGCCuGCCg -3'
miRNA:   3'- -CGUCUGCC--------AGCGU------UGGG--CGCGG-CGGg -5'
4037 3' -60.9 NC_001650.1 + 153747 0.72 0.420081
Target:  5'- cGCGGGCGGgaugggCGaGACCCcccugaGCCGCCCc -3'
miRNA:   3'- -CGUCUGCCa-----GCgUUGGGcg----CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 153414 0.69 0.592541
Target:  5'- aGCucuCGGUCaGCAcGCgCaGCGCCGCCCc -3'
miRNA:   3'- -CGucuGCCAG-CGU-UGgG-CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 153291 0.68 0.660128
Target:  5'- cGCGGGCGGU-GCcaccGACCC-CGCCccuGUCCg -3'
miRNA:   3'- -CGUCUGCCAgCG----UUGGGcGCGG---CGGG- -5'
4037 3' -60.9 NC_001650.1 + 148919 0.75 0.300788
Target:  5'- aCAGGCGuGUgGCccuGGCCCGCGCCcguccccgGCCCg -3'
miRNA:   3'- cGUCUGC-CAgCG---UUGGGCGCGG--------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 148317 0.69 0.611816
Target:  5'- -aGGAC-GUUGUAGCCCGgccaGuCCGCCCg -3'
miRNA:   3'- cgUCUGcCAGCGUUGGGCg---C-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 147997 0.69 0.611816
Target:  5'- uCAGGuucaGGUUGUAcACCUGCGUgGCCCu -3'
miRNA:   3'- cGUCUg---CCAGCGU-UGGGCGCGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.