miRNA display CGI


Results 61 - 80 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 117745 0.66 0.762415
Target:  5'- aGCAGAacuccaGGUCGgguucaggggcgaCAGCCgGuCGgCGCCCu -3'
miRNA:   3'- -CGUCUg-----CCAGC-------------GUUGGgC-GCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 117715 0.66 0.745184
Target:  5'- -gAGACGGUcCGgGGCCUGCGgUGCa- -3'
miRNA:   3'- cgUCUGCCA-GCgUUGGGCGCgGCGgg -5'
4037 3' -60.9 NC_001650.1 + 117706 0.68 0.660128
Target:  5'- uGUAGACGGcC---GCCCGCaCCGCCg -3'
miRNA:   3'- -CGUCUGCCaGcguUGGGCGcGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 117356 0.7 0.544902
Target:  5'- cGCcccCGG-CGCcuCCCGCGgCGCCCg -3'
miRNA:   3'- -CGucuGCCaGCGuuGGGCGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 117287 0.67 0.698454
Target:  5'- -aGGACGc-CGCcAUCCGCGCCccgGCCCc -3'
miRNA:   3'- cgUCUGCcaGCGuUGGGCGCGG---CGGG- -5'
4037 3' -60.9 NC_001650.1 + 117118 0.68 0.650478
Target:  5'- -gGGGCGGggGCAGCuuGgagaCGUCGCCCc -3'
miRNA:   3'- cgUCUGCCagCGUUGggC----GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 115649 0.66 0.79826
Target:  5'- -aAGAuCGcGU-GCGAccCCCGCGgCGCCCg -3'
miRNA:   3'- cgUCU-GC-CAgCGUU--GGGCGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 115127 0.67 0.735984
Target:  5'- aCAGACGcUCGCcucCCUGUGCgCGCUCc -3'
miRNA:   3'- cGUCUGCcAGCGuu-GGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 114942 0.66 0.763312
Target:  5'- gGUGGACGGUCuu-GCUgGCcUCGCCCa -3'
miRNA:   3'- -CGUCUGCCAGcguUGGgCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 114899 0.69 0.611816
Target:  5'- -gAGGgGGUCGCGcgggaccgGCCUGCGCgCGaCCUg -3'
miRNA:   3'- cgUCUgCCAGCGU--------UGGGCGCG-GC-GGG- -5'
4037 3' -60.9 NC_001650.1 + 111523 0.67 0.70793
Target:  5'- --cGugGGUgGCGA-CCGC-CUGCCCa -3'
miRNA:   3'- cguCugCCAgCGUUgGGCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 111442 0.69 0.621478
Target:  5'- -gAGGCGG-CGCGagGCCaGC-CCGCCCu -3'
miRNA:   3'- cgUCUGCCaGCGU--UGGgCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 111193 0.81 0.123466
Target:  5'- cCAGGCGGcUCagGCGGCCCGCGCC-CCCa -3'
miRNA:   3'- cGUCUGCC-AG--CGUUGGGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 110759 0.68 0.67072
Target:  5'- gGCAGGCGaagcccgcguUCGCAggugccuggcgucggGCCCGUugugcuggcccuggGCCGCCCc -3'
miRNA:   3'- -CGUCUGCc---------AGCGU---------------UGGGCG--------------CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 110538 0.69 0.621478
Target:  5'- aGCAG-CGGgcgCGCGAgCaacaGCCGCCCc -3'
miRNA:   3'- -CGUCuGCCa--GCGUUgGgcg-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 109431 0.67 0.726703
Target:  5'- gGUAGAUGGcCagguuauccaGCAgGCCCaGCauGCCGCCCg -3'
miRNA:   3'- -CGUCUGCCaG----------CGU-UGGG-CG--CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 109340 0.69 0.602169
Target:  5'- -aAGAUGuUCaGCAGCUCGUGCUGCUCg -3'
miRNA:   3'- cgUCUGCcAG-CGUUGGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 109275 0.7 0.516909
Target:  5'- aUAGugGGggGCGcCCCGCucGUCGCCCu -3'
miRNA:   3'- cGUCugCCagCGUuGGGCG--CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 108955 0.69 0.592541
Target:  5'- aGCAGcugucCGuGUCcagGCAcgaguacuuuaACCCGCGCCuGCCCg -3'
miRNA:   3'- -CGUCu----GC-CAG---CGU-----------UGGGCGCGG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 108918 0.67 0.706039
Target:  5'- cGCAGGgGGgCGCuguuccagguuuGCgCGCGCCucGCCCu -3'
miRNA:   3'- -CGUCUgCCaGCGu-----------UGgGCGCGG--CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.