miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 133875 0.72 0.444577
Target:  5'- gGCAG-CGGUCGCcucuagaGGCcgccccugggaCCGCGgCGCCCa -3'
miRNA:   3'- -CGUCuGCCAGCG-------UUG-----------GGCGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 131645 0.74 0.349544
Target:  5'- aGCuGGCGGcCGCcuGCCUGCGC-GCCCc -3'
miRNA:   3'- -CGuCUGCCaGCGu-UGGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 66721 0.74 0.356952
Target:  5'- -aGGACGGUguUGUAGCUCGCGgCGCCg -3'
miRNA:   3'- cgUCUGCCA--GCGUUGGGCGCgGCGGg -5'
4037 3' -60.9 NC_001650.1 + 102249 0.73 0.36447
Target:  5'- cCAGACGG-CGCAGCCgGCGCagguGCUg -3'
miRNA:   3'- cGUCUGCCaGCGUUGGgCGCGg---CGGg -5'
4037 3' -60.9 NC_001650.1 + 157571 0.73 0.39562
Target:  5'- gGCAGcuuggagaGGUa-CAGCaCCGCGCCGCCCc -3'
miRNA:   3'- -CGUCug------CCAgcGUUG-GGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 60098 0.73 0.403671
Target:  5'- cGCcGAgGGUC-UGGCCCGaccCGCCGCCCg -3'
miRNA:   3'- -CGuCUgCCAGcGUUGGGC---GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 30920 0.72 0.411826
Target:  5'- cGCGGACaggggcggGGUCGUGgcaccGCCCGCGCgaCGUCCu -3'
miRNA:   3'- -CGUCUG--------CCAGCGU-----UGGGCGCG--GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 68843 0.72 0.436889
Target:  5'- uCGGACGGga-CGugCCGCGCCccggGCCCa -3'
miRNA:   3'- cGUCUGCCagcGUugGGCGCGG----CGGG- -5'
4037 3' -60.9 NC_001650.1 + 155812 0.72 0.436889
Target:  5'- uGUAGAgGGUCaGCuccccGCCCGCGCacgCGUCCu -3'
miRNA:   3'- -CGUCUgCCAG-CGu----UGGGCGCG---GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 164613 0.74 0.334345
Target:  5'- cGCAGGC---UGCAGCCCGagcggaaCGCCGCCCc -3'
miRNA:   3'- -CGUCUGccaGCGUUGGGC-------GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 77129 0.74 0.321016
Target:  5'- -uGGGUGGUCGCGgcgGCCC-CGUCGCCCa -3'
miRNA:   3'- cgUCUGCCAGCGU---UGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 55605 0.75 0.314162
Target:  5'- -gAGACGGUCagguaGCGGCgCCGCGCguuUGCCCu -3'
miRNA:   3'- cgUCUGCCAG-----CGUUG-GGCGCG---GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 111193 0.81 0.123466
Target:  5'- cCAGGCGGcUCagGCGGCCCGCGCC-CCCa -3'
miRNA:   3'- cGUCUGCC-AG--CGUUGGGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 132901 0.77 0.207936
Target:  5'- -gAGGCGGUgGC-GCCCGCuccgcgagacuacaGCCGCCCg -3'
miRNA:   3'- cgUCUGCCAgCGuUGGGCG--------------CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 49894 0.76 0.263316
Target:  5'- uCAGGCGG--GCGACCUG-GCCGCCCu -3'
miRNA:   3'- cGUCUGCCagCGUUGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 119824 0.76 0.269288
Target:  5'- gGguGugGGgCGCGGCguCCGCGCCcaGCCCg -3'
miRNA:   3'- -CguCugCCaGCGUUG--GGCGCGG--CGGG- -5'
4037 3' -60.9 NC_001650.1 + 133950 0.75 0.287857
Target:  5'- gGCAGGCGGcCGCAguGCCCGCGgaGCa- -3'
miRNA:   3'- -CGUCUGCCaGCGU--UGGGCGCggCGgg -5'
4037 3' -60.9 NC_001650.1 + 125110 0.75 0.294267
Target:  5'- aGCAGGCGGUCaGCGGCCCGaacaGCCagGCa- -3'
miRNA:   3'- -CGUCUGCCAG-CGUUGGGCg---CGG--CGgg -5'
4037 3' -60.9 NC_001650.1 + 24508 0.75 0.314162
Target:  5'- gGguGGCGGUCcuGCuccuGCCCG-GCUGCCCc -3'
miRNA:   3'- -CguCUGCCAG--CGu---UGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 50557 0.75 0.314162
Target:  5'- gGCGGugGaGUgcccgCGCAACCCGgucaggGCCGCCCc -3'
miRNA:   3'- -CGUCugC-CA-----GCGUUGGGCg-----CGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.