Results 41 - 60 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 133950 | 0.75 | 0.287857 |
Target: 5'- gGCAGGCGGcCGCAguGCCCGCGgaGCa- -3' miRNA: 3'- -CGUCUGCCaGCGU--UGGGCGCggCGgg -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 119824 | 0.76 | 0.269288 |
Target: 5'- gGguGugGGgCGCGGCguCCGCGCCcaGCCCg -3' miRNA: 3'- -CguCugCCaGCGUUG--GGCGCGG--CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 49894 | 0.76 | 0.263316 |
Target: 5'- uCAGGCGG--GCGACCUG-GCCGCCCu -3' miRNA: 3'- cGUCUGCCagCGUUGGGCgCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 132901 | 0.77 | 0.207936 |
Target: 5'- -gAGGCGGUgGC-GCCCGCuccgcgagacuacaGCCGCCCg -3' miRNA: 3'- cgUCUGCCAgCGuUGGGCG--------------CGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 111193 | 0.81 | 0.123466 |
Target: 5'- cCAGGCGGcUCagGCGGCCCGCGCC-CCCa -3' miRNA: 3'- cGUCUGCC-AG--CGUUGGGCGCGGcGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 102249 | 0.73 | 0.36447 |
Target: 5'- cCAGACGG-CGCAGCCgGCGCagguGCUg -3' miRNA: 3'- cGUCUGCCaGCGUUGGgCGCGg---CGGg -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 157571 | 0.73 | 0.39562 |
Target: 5'- gGCAGcuuggagaGGUa-CAGCaCCGCGCCGCCCc -3' miRNA: 3'- -CGUCug------CCAgcGUUG-GGCGCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 109275 | 0.7 | 0.516909 |
Target: 5'- aUAGugGGggGCGcCCCGCucGUCGCCCu -3' miRNA: 3'- cGUCugCCagCGUuGGGCG--CGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 56667 | 0.71 | 0.511378 |
Target: 5'- cGCAGuagccaugggcuaaaAgGGaacaugugcacUCGCGGCCCGCuGCCGCUCg -3' miRNA: 3'- -CGUC---------------UgCC-----------AGCGUUGGGCG-CGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 78783 | 0.71 | 0.499479 |
Target: 5'- gGCAG-CGGggacgagaucgccgcCGCGACCgGCGCUcgGCCCu -3' miRNA: 3'- -CGUCuGCCa--------------GCGUUGGgCGCGG--CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 22476 | 0.71 | 0.498569 |
Target: 5'- -uGGACGGgagCGCG----GCGCCGCCCg -3' miRNA: 3'- cgUCUGCCa--GCGUugggCGCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 54170 | 0.71 | 0.495843 |
Target: 5'- gGCGGAUucuagGGUC-CAGucgccgguggagcuCCCGgGCCGCCCa -3' miRNA: 3'- -CGUCUG-----CCAGcGUU--------------GGGCgCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 52813 | 0.71 | 0.471624 |
Target: 5'- cGCAgGACGGgCGCGgcguucucggcGCCCuGC-CCGCCCu -3' miRNA: 3'- -CGU-CUGCCaGCGU-----------UGGG-CGcGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 72702 | 0.71 | 0.462806 |
Target: 5'- gGCAGGCGGUCGCcACCCaCGagaggGCCa -3' miRNA: 3'- -CGUCUGCCAGCGuUGGGcGCgg---CGGg -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 53197 | 0.72 | 0.454076 |
Target: 5'- cCGGAgccCGGcUCGCGuCCCGgGCgGCCCg -3' miRNA: 3'- cGUCU---GCC-AGCGUuGGGCgCGgCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 133875 | 0.72 | 0.444577 |
Target: 5'- gGCAG-CGGUCGCcucuagaGGCcgccccugggaCCGCGgCGCCCa -3' miRNA: 3'- -CGUCuGCCAGCG-------UUG-----------GGCGCgGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 155812 | 0.72 | 0.436889 |
Target: 5'- uGUAGAgGGUCaGCuccccGCCCGCGCacgCGUCCu -3' miRNA: 3'- -CGUCUgCCAG-CGu----UGGGCGCG---GCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 68843 | 0.72 | 0.436889 |
Target: 5'- uCGGACGGga-CGugCCGCGCCccggGCCCa -3' miRNA: 3'- cGUCUGCCagcGUugGGCGCGG----CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 30920 | 0.72 | 0.411826 |
Target: 5'- cGCGGACaggggcggGGUCGUGgcaccGCCCGCGCgaCGUCCu -3' miRNA: 3'- -CGUCUG--------CCAGCGU-----UGGGCGCG--GCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 60098 | 0.73 | 0.403671 |
Target: 5'- cGCcGAgGGUC-UGGCCCGaccCGCCGCCCg -3' miRNA: 3'- -CGuCUgCCAGcGUUGGGC---GCGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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