miRNA display CGI


Results 61 - 80 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 155812 0.72 0.436889
Target:  5'- uGUAGAgGGUCaGCuccccGCCCGCGCacgCGUCCu -3'
miRNA:   3'- -CGUCUgCCAG-CGu----UGGGCGCG---GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 133875 0.72 0.444577
Target:  5'- gGCAG-CGGUCGCcucuagaGGCcgccccugggaCCGCGgCGCCCa -3'
miRNA:   3'- -CGUCuGCCAGCG-------UUG-----------GGCGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 61110 0.7 0.544902
Target:  5'- -gAGAUGGugaugaggagcUCGCcuCCCcCGCCGCCCc -3'
miRNA:   3'- cgUCUGCC-----------AGCGuuGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 147661 0.7 0.544902
Target:  5'- cCGGugGGaagCGCGGCCgGgaGCCGCUCu -3'
miRNA:   3'- cGUCugCCa--GCGUUGGgCg-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 57321 0.7 0.554345
Target:  5'- cGUAGcgcCGGUgGCAcCCCcacccgccugugGCGCCGCCUg -3'
miRNA:   3'- -CGUCu--GCCAgCGUuGGG------------CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 156229 0.69 0.573369
Target:  5'- aGCAGGCGaucagccccccGUCGCucacgucguGGCCCGCGgucaCCaGCCCg -3'
miRNA:   3'- -CGUCUGC-----------CAGCG---------UUGGGCGC----GG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 108955 0.69 0.592541
Target:  5'- aGCAGcugucCGuGUCcagGCAcgaguacuuuaACCCGCGCCuGCCCg -3'
miRNA:   3'- -CGUCu----GC-CAG---CGU-----------UGGGCGCGG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 57756 0.69 0.592541
Target:  5'- gGC-GACGGgggaGUAGCCCgGCGCCGguauCCCc -3'
miRNA:   3'- -CGuCUGCCag--CGUUGGG-CGCGGC----GGG- -5'
4037 3' -60.9 NC_001650.1 + 56368 0.69 0.598315
Target:  5'- cCAGGCGcUCGCccacgggcgaaCCGgGCCGCCCu -3'
miRNA:   3'- cGUCUGCcAGCGuug--------GGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 60537 0.69 0.608921
Target:  5'- gGCGG-CGGUCuGUuuGguguuggggaacauGCCCGCGUCGCUCa -3'
miRNA:   3'- -CGUCuGCCAG-CG--U--------------UGGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 22055 0.7 0.526179
Target:  5'- -aAGGCGGaCGC-GCUCGCcaaGCUGCCCg -3'
miRNA:   3'- cgUCUGCCaGCGuUGGGCG---CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 155776 0.7 0.526179
Target:  5'- aCAGcACGGcCGCc-CCCaccCGCCGCCCg -3'
miRNA:   3'- cGUC-UGCCaGCGuuGGGc--GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 53197 0.72 0.454076
Target:  5'- cCGGAgccCGGcUCGCGuCCCGgGCgGCCCg -3'
miRNA:   3'- cGUCU---GCC-AGCGUuGGGCgCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 72702 0.71 0.462806
Target:  5'- gGCAGGCGGUCGCcACCCaCGagaggGCCa -3'
miRNA:   3'- -CGUCUGCCAGCGuUGGGcGCgg---CGGg -5'
4037 3' -60.9 NC_001650.1 + 52813 0.71 0.471624
Target:  5'- cGCAgGACGGgCGCGgcguucucggcGCCCuGC-CCGCCCu -3'
miRNA:   3'- -CGU-CUGCCaGCGU-----------UGGG-CGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 54170 0.71 0.495843
Target:  5'- gGCGGAUucuagGGUC-CAGucgccgguggagcuCCCGgGCCGCCCa -3'
miRNA:   3'- -CGUCUG-----CCAGcGUU--------------GGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 22476 0.71 0.498569
Target:  5'- -uGGACGGgagCGCG----GCGCCGCCCg -3'
miRNA:   3'- cgUCUGCCa--GCGUugggCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 78783 0.71 0.499479
Target:  5'- gGCAG-CGGggacgagaucgccgcCGCGACCgGCGCUcgGCCCu -3'
miRNA:   3'- -CGUCuGCCa--------------GCGUUGGgCGCGG--CGGG- -5'
4037 3' -60.9 NC_001650.1 + 56667 0.71 0.511378
Target:  5'- cGCAGuagccaugggcuaaaAgGGaacaugugcacUCGCGGCCCGCuGCCGCUCg -3'
miRNA:   3'- -CGUC---------------UgCC-----------AGCGUUGGGCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 109275 0.7 0.516909
Target:  5'- aUAGugGGggGCGcCCCGCucGUCGCCCu -3'
miRNA:   3'- cGUCugCCagCGUuGGGCG--CGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.