miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 156229 0.69 0.573369
Target:  5'- aGCAGGCGaucagccccccGUCGCucacgucguGGCCCGCGgucaCCaGCCCg -3'
miRNA:   3'- -CGUCUGC-----------CAGCG---------UUGGGCGC----GG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 57321 0.7 0.554345
Target:  5'- cGUAGcgcCGGUgGCAcCCCcacccgccugugGCGCCGCCUg -3'
miRNA:   3'- -CGUCu--GCCAgCGUuGGG------------CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 54170 0.71 0.495843
Target:  5'- gGCGGAUucuagGGUC-CAGucgccgguggagcuCCCGgGCCGCCCa -3'
miRNA:   3'- -CGUCUG-----CCAGcGUU--------------GGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 22476 0.71 0.498569
Target:  5'- -uGGACGGgagCGCG----GCGCCGCCCg -3'
miRNA:   3'- cgUCUGCCa--GCGUugggCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 78783 0.71 0.499479
Target:  5'- gGCAG-CGGggacgagaucgccgcCGCGACCgGCGCUcgGCCCu -3'
miRNA:   3'- -CGUCuGCCa--------------GCGUUGGgCGCGG--CGGG- -5'
4037 3' -60.9 NC_001650.1 + 56667 0.71 0.511378
Target:  5'- cGCAGuagccaugggcuaaaAgGGaacaugugcacUCGCGGCCCGCuGCCGCUCg -3'
miRNA:   3'- -CGUC---------------UgCC-----------AGCGUUGGGCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 109275 0.7 0.516909
Target:  5'- aUAGugGGggGCGcCCCGCucGUCGCCCu -3'
miRNA:   3'- cGUCugCCagCGUuGGGCG--CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 155776 0.7 0.526179
Target:  5'- aCAGcACGGcCGCc-CCCaccCGCCGCCCg -3'
miRNA:   3'- cGUC-UGCCaGCGuuGGGc--GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 22055 0.7 0.526179
Target:  5'- -aAGGCGGaCGC-GCUCGCcaaGCUGCCCg -3'
miRNA:   3'- cgUCUGCCaGCGuUGGGCG---CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 61110 0.7 0.544902
Target:  5'- -gAGAUGGugaugaggagcUCGCcuCCCcCGCCGCCCc -3'
miRNA:   3'- cgUCUGCC-----------AGCGuuGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 147661 0.7 0.544902
Target:  5'- cCGGugGGaagCGCGGCCgGgaGCCGCUCu -3'
miRNA:   3'- cGUCugCCa--GCGUUGGgCg-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 41157 0.74 0.349544
Target:  5'- aGCAGGCGGagcgccucggCGCccUCCGCGUgGCCCg -3'
miRNA:   3'- -CGUCUGCCa---------GCGuuGGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 107131 0.74 0.342245
Target:  5'- gGUGGugGG-CG-AGCCCGCGCuCGUCCa -3'
miRNA:   3'- -CGUCugCCaGCgUUGGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 78229 0.75 0.314162
Target:  5'- uGCAGGuacaGGUCGUAcCCgGCGUCGUCCg -3'
miRNA:   3'- -CGUCUg---CCAGCGUuGGgCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 148919 0.75 0.300788
Target:  5'- aCAGGCGuGUgGCccuGGCCCGCGCCcguccccgGCCCg -3'
miRNA:   3'- cGUCUGC-CAgCG---UUGGGCGCGG--------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 105427 0.75 0.300131
Target:  5'- aGC-GcCGGUCGCGGcggcgaucucgucCCCGCuGCCGCCCc -3'
miRNA:   3'- -CGuCuGCCAGCGUU-------------GGGCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 106260 0.76 0.275368
Target:  5'- gGCGcGACGGccccUCGguGCCuCGCaGCCGCCCc -3'
miRNA:   3'- -CGU-CUGCC----AGCguUGG-GCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 90688 0.76 0.275368
Target:  5'- cGCAGACca-CGCAggGCaCCGCGCCGCUCu -3'
miRNA:   3'- -CGUCUGccaGCGU--UG-GGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 63143 0.76 0.269288
Target:  5'- -aGGACGGgCGCccCCCGCGCCGCg- -3'
miRNA:   3'- cgUCUGCCaGCGuuGGGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 115649 0.66 0.79826
Target:  5'- -aAGAuCGcGU-GCGAccCCCGCGgCGCCCg -3'
miRNA:   3'- cgUCU-GC-CAgCGUU--GGGCGCgGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.