miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 54214 0.76 0.263316
Target:  5'- gGCccGCGGccUCGU--CCCGCGCCGCCCu -3'
miRNA:   3'- -CGucUGCC--AGCGuuGGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 133212 0.72 0.445436
Target:  5'- -gAGGgGGcCGCcgcGCCCGCGCC-CCCg -3'
miRNA:   3'- cgUCUgCCaGCGu--UGGGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 104050 0.72 0.454076
Target:  5'- --uGGCGuGUgCGCuGCCCG-GCCGCCCu -3'
miRNA:   3'- cguCUGC-CA-GCGuUGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 115649 0.66 0.79826
Target:  5'- -aAGAuCGcGU-GCGAccCCCGCGgCGCCCg -3'
miRNA:   3'- cgUCU-GC-CAgCGUU--GGGCGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 105427 0.75 0.300131
Target:  5'- aGC-GcCGGUCGCGGcggcgaucucgucCCCGCuGCCGCCCc -3'
miRNA:   3'- -CGuCuGCCAGCGUU-------------GGGCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 148919 0.75 0.300788
Target:  5'- aCAGGCGuGUgGCccuGGCCCGCGCCcguccccgGCCCg -3'
miRNA:   3'- cGUCUGC-CAgCG---UUGGGCGCGG--------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 107131 0.74 0.342245
Target:  5'- gGUGGugGG-CG-AGCCCGCGCuCGUCCa -3'
miRNA:   3'- -CGUCugCCaGCgUUGGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 41157 0.74 0.349544
Target:  5'- aGCAGGCGGagcgccucggCGCccUCCGCGUgGCCCg -3'
miRNA:   3'- -CGUCUGCCa---------GCGuuGGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 63314 0.72 0.409369
Target:  5'- cGCAGcucGCGG-CGguGCUugggggcguugucgCGCGCCGCCCc -3'
miRNA:   3'- -CGUC---UGCCaGCguUGG--------------GCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 51671 0.72 0.436889
Target:  5'- cGgGGGCGcGUCGCccggggGGCgCGCGuuGCCCa -3'
miRNA:   3'- -CgUCUGC-CAGCG------UUGgGCGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 153747 0.72 0.420081
Target:  5'- cGCGGGCGGgaugggCGaGACCCcccugaGCCGCCCc -3'
miRNA:   3'- -CGUCUGCCa-----GCgUUGGGcg----CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 95128 0.73 0.403671
Target:  5'- gGUGGGCGGUCGUccCCCGCGacgaGCCa -3'
miRNA:   3'- -CGUCUGCCAGCGuuGGGCGCgg--CGGg -5'
4037 3' -60.9 NC_001650.1 + 63143 0.76 0.269288
Target:  5'- -aGGACGGgCGCccCCCGCGCCGCg- -3'
miRNA:   3'- cgUCUGCCaGCGuuGGGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 52583 0.72 0.436889
Target:  5'- gGCAGGCGGcCGcCAGCUCGgGCCgggugGCCa -3'
miRNA:   3'- -CGUCUGCCaGC-GUUGGGCgCGG-----CGGg -5'
4037 3' -60.9 NC_001650.1 + 90688 0.76 0.275368
Target:  5'- cGCAGACca-CGCAggGCaCCGCGCCGCUCu -3'
miRNA:   3'- -CGUCUGccaGCGU--UG-GGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 62614 0.74 0.355462
Target:  5'- aGUGGACGGgccacccgagggCGCuGCCCucCGCCGCCCc -3'
miRNA:   3'- -CGUCUGCCa-----------GCGuUGGGc-GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 21174 0.72 0.436889
Target:  5'- gGCGGGCGG-CGCGGgUUGCGaCCGUCUg -3'
miRNA:   3'- -CGUCUGCCaGCGUUgGGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 62391 0.72 0.454076
Target:  5'- cGCgAGACGGUuccCGCGcccccguuGCCCcCGCCGCUCc -3'
miRNA:   3'- -CG-UCUGCCA---GCGU--------UGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 106260 0.76 0.275368
Target:  5'- gGCGcGACGGccccUCGguGCCuCGCaGCCGCCCc -3'
miRNA:   3'- -CGU-CUGCC----AGCguUGG-GCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 78229 0.75 0.314162
Target:  5'- uGCAGGuacaGGUCGUAcCCgGCGUCGUCCg -3'
miRNA:   3'- -CGUCUg---CCAGCGUuGGgCGCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.