miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 20688 0.71 0.480525
Target:  5'- aCGGGgGGUCugGugCCGgGCCGCCCc -3'
miRNA:   3'- cGUCUgCCAGcgUugGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 104050 0.72 0.454076
Target:  5'- --uGGCGuGUgCGCuGCCCG-GCCGCCCu -3'
miRNA:   3'- cguCUGC-CA-GCGuUGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 95128 0.73 0.403671
Target:  5'- gGUGGGCGGUCGUccCCCGCGacgaGCCa -3'
miRNA:   3'- -CGUCUGCCAGCGuuGGGCGCgg--CGGg -5'
4037 3' -60.9 NC_001650.1 + 106260 0.76 0.275368
Target:  5'- gGCGcGACGGccccUCGguGCCuCGCaGCCGCCCc -3'
miRNA:   3'- -CGU-CUGCC----AGCguUGG-GCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 135007 0.69 0.580065
Target:  5'- cGCAGGgGGgugagcaccaggCGCAGCUcgcccucggccagCGCGCgGCCCu -3'
miRNA:   3'- -CGUCUgCCa-----------GCGUUGG-------------GCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 51257 0.71 0.507704
Target:  5'- cGCGGGCGaG-CGCGgaccaccggaggGCUCGCGCCGCg- -3'
miRNA:   3'- -CGUCUGC-CaGCGU------------UGGGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 133212 0.72 0.445436
Target:  5'- -gAGGgGGcCGCcgcGCCCGCGCC-CCCg -3'
miRNA:   3'- cgUCUgCCaGCGu--UGGGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 90688 0.76 0.275368
Target:  5'- cGCAGACca-CGCAggGCaCCGCGCCGCUCu -3'
miRNA:   3'- -CGUCUGccaGCGU--UG-GGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 98225 0.71 0.498569
Target:  5'- cGCAGGCGcuGUCuaGCGugCCGCGgCC-CCCg -3'
miRNA:   3'- -CGUCUGC--CAG--CGUugGGCGC-GGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 63143 0.76 0.269288
Target:  5'- -aGGACGGgCGCccCCCGCGCCGCg- -3'
miRNA:   3'- cgUCUGCCaGCGuuGGGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 62391 0.72 0.454076
Target:  5'- cGCgAGACGGUuccCGCGcccccguuGCCCcCGCCGCUCc -3'
miRNA:   3'- -CG-UCUGCCA---GCGU--------UGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 37715 0.71 0.484109
Target:  5'- gGCAGAUugucagagaugacugGGuuucugggcUCGCGgcGCCCGgGCCGCCUa -3'
miRNA:   3'- -CGUCUG---------------CC---------AGCGU--UGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 52583 0.72 0.436889
Target:  5'- gGCAGGCGGcCGcCAGCUCGgGCCgggugGCCa -3'
miRNA:   3'- -CGUCUGCCaGC-GUUGGGCgCGG-----CGGg -5'
4037 3' -60.9 NC_001650.1 + 63314 0.72 0.409369
Target:  5'- cGCAGcucGCGG-CGguGCUugggggcguugucgCGCGCCGCCCc -3'
miRNA:   3'- -CGUC---UGCCaGCguUGG--------------GCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 107131 0.74 0.342245
Target:  5'- gGUGGugGG-CG-AGCCCGCGCuCGUCCa -3'
miRNA:   3'- -CGUCugCCaGCgUUGGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 105427 0.75 0.300131
Target:  5'- aGC-GcCGGUCGCGGcggcgaucucgucCCCGCuGCCGCCCc -3'
miRNA:   3'- -CGuCuGCCAGCGUU-------------GGGCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 153414 0.69 0.592541
Target:  5'- aGCucuCGGUCaGCAcGCgCaGCGCCGCCCc -3'
miRNA:   3'- -CGucuGCCAG-CGU-UGgG-CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 102589 0.69 0.582939
Target:  5'- --uGACGGgggaGCuGGCCCGCGCggcgcgCGCCCu -3'
miRNA:   3'- cguCUGCCag--CG-UUGGGCGCG------GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 117356 0.7 0.544902
Target:  5'- cGCcccCGG-CGCcuCCCGCGgCGCCCg -3'
miRNA:   3'- -CGucuGCCaGCGuuGGGCGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 104375 0.7 0.516909
Target:  5'- aUAGGCGGUCGCuGCCaagcagGCGa-GCCCa -3'
miRNA:   3'- cGUCUGCCAGCGuUGGg-----CGCggCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.