miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 146970 0.69 0.573369
Target:  5'- gGCAu-CGGgggCGCAcuccACCCGC-CUGCCCa -3'
miRNA:   3'- -CGUcuGCCa--GCGU----UGGGCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 133212 0.72 0.445436
Target:  5'- -gAGGgGGcCGCcgcGCCCGCGCC-CCCg -3'
miRNA:   3'- cgUCUgCCaGCGu--UGGGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 90688 0.76 0.275368
Target:  5'- cGCAGACca-CGCAggGCaCCGCGCCGCUCu -3'
miRNA:   3'- -CGUCUGccaGCGU--UG-GGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 19565 0.69 0.573369
Target:  5'- cGCGGucccacCGGgagccCGgGugCCGCGCgGCCCg -3'
miRNA:   3'- -CGUCu-----GCCa----GCgUugGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 63143 0.76 0.269288
Target:  5'- -aGGACGGgCGCccCCCGCGCCGCg- -3'
miRNA:   3'- cgUCUGCCaGCGuuGGGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 81741 0.68 0.660128
Target:  5'- cGCGGugGGUacCGCcaccuCCUGgGCgGCCUg -3'
miRNA:   3'- -CGUCugCCA--GCGuu---GGGCgCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 105427 0.75 0.300131
Target:  5'- aGC-GcCGGUCGCGGcggcgaucucgucCCCGCuGCCGCCCc -3'
miRNA:   3'- -CGuCuGCCAGCGUU-------------GGGCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 62038 0.68 0.650478
Target:  5'- cGUGGAagUGGUCcaGCAgguuGCCCaggGCGCCGCCg -3'
miRNA:   3'- -CGUCU--GCCAG--CGU----UGGG---CGCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 129377 0.68 0.631146
Target:  5'- cCAGugGGggUGCAgaacccaguACCCGCGCgaGCCg -3'
miRNA:   3'- cGUCugCCa-GCGU---------UGGGCGCGg-CGGg -5'
4037 3' -60.9 NC_001650.1 + 122727 0.69 0.621478
Target:  5'- uGCAGGCGGccaggaaaagaUgGCcGCCaGCGUCGCCUu -3'
miRNA:   3'- -CGUCUGCC-----------AgCGuUGGgCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 73676 0.69 0.611816
Target:  5'- cGgGGGCGGcUGUuGCUCGCGC-GCCCg -3'
miRNA:   3'- -CgUCUGCCaGCGuUGGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 153414 0.69 0.592541
Target:  5'- aGCucuCGGUCaGCAcGCgCaGCGCCGCCCc -3'
miRNA:   3'- -CGucuGCCAG-CGU-UGgG-CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 102589 0.69 0.582939
Target:  5'- --uGACGGgggaGCuGGCCCGCGCggcgcgCGCCCu -3'
miRNA:   3'- cguCUGCCag--CG-UUGGGCGCG------GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 95464 0.7 0.516909
Target:  5'- cGCAGGCGcGUCgGCcugcCCCGCuuGCCGgCCg -3'
miRNA:   3'- -CGUCUGC-CAG-CGuu--GGGCG--CGGCgGG- -5'
4037 3' -60.9 NC_001650.1 + 98225 0.71 0.498569
Target:  5'- cGCAGGCGcuGUCuaGCGugCCGCGgCC-CCCg -3'
miRNA:   3'- -CGUCUGC--CAG--CGUugGGCGC-GGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 20688 0.71 0.480525
Target:  5'- aCGGGgGGUCugGugCCGgGCCGCCCc -3'
miRNA:   3'- cGUCUgCCAGcgUugGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 104050 0.72 0.454076
Target:  5'- --uGGCGuGUgCGCuGCCCG-GCCGCCCu -3'
miRNA:   3'- cguCUGC-CA-GCGuUGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 52583 0.72 0.436889
Target:  5'- gGCAGGCGGcCGcCAGCUCGgGCCgggugGCCa -3'
miRNA:   3'- -CGUCUGCCaGC-GUUGGGCgCGG-----CGGg -5'
4037 3' -60.9 NC_001650.1 + 63314 0.72 0.409369
Target:  5'- cGCAGcucGCGG-CGguGCUugggggcguugucgCGCGCCGCCCc -3'
miRNA:   3'- -CGUC---UGCCaGCguUGG--------------GCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 107131 0.74 0.342245
Target:  5'- gGUGGugGG-CG-AGCCCGCGCuCGUCCa -3'
miRNA:   3'- -CGUCugCCaGCgUUGGGCGCG-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.