miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 102589 0.69 0.582939
Target:  5'- --uGACGGgggaGCuGGCCCGCGCggcgcgCGCCCu -3'
miRNA:   3'- cguCUGCCag--CG-UUGGGCGCG------GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 109340 0.69 0.602169
Target:  5'- -aAGAUGuUCaGCAGCUCGUGCUGCUCg -3'
miRNA:   3'- cgUCUGCcAG-CGUUGGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 148919 0.75 0.300788
Target:  5'- aCAGGCGuGUgGCccuGGCCCGCGCCcguccccgGCCCg -3'
miRNA:   3'- cGUCUGC-CAgCG---UUGGGCGCGG--------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 41157 0.74 0.349544
Target:  5'- aGCAGGCGGagcgccucggCGCccUCCGCGUgGCCCg -3'
miRNA:   3'- -CGUCUGCCa---------GCGuuGGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 133927 0.72 0.411826
Target:  5'- -uGGGCGcUCGCcgucuccCCCGcCGCCGCCCg -3'
miRNA:   3'- cgUCUGCcAGCGuu-----GGGC-GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 21174 0.72 0.436889
Target:  5'- gGCGGGCGG-CGCGGgUUGCGaCCGUCUg -3'
miRNA:   3'- -CGUCUGCCaGCGUUgGGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 59448 0.71 0.462806
Target:  5'- uGCAGACGGcCc---CCCGCGCcCGUCCc -3'
miRNA:   3'- -CGUCUGCCaGcguuGGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 37715 0.71 0.484109
Target:  5'- gGCAGAUugucagagaugacugGGuuucugggcUCGCGgcGCCCGgGCCGCCUa -3'
miRNA:   3'- -CGUCUG---------------CC---------AGCGU--UGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 51257 0.71 0.507704
Target:  5'- cGCGGGCGaG-CGCGgaccaccggaggGCUCGCGCCGCg- -3'
miRNA:   3'- -CGUCUGC-CaGCGU------------UGGGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 146634 0.7 0.535512
Target:  5'- aCAGGCgcucGGcCGCcGCCCGCaCCGCCUc -3'
miRNA:   3'- cGUCUG----CCaGCGuUGGGCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 76013 0.66 0.754296
Target:  5'- cGCGGACucgaGGUCGUca--CGCGCCagcuucuuGCCCa -3'
miRNA:   3'- -CGUCUG----CCAGCGuuggGCGCGG--------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 38475 0.66 0.745184
Target:  5'- gGCGGACcugccCGCcauGGCCC-UGCCGCCCu -3'
miRNA:   3'- -CGUCUGcca--GCG---UUGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 147997 0.69 0.611816
Target:  5'- uCAGGuucaGGUUGUAcACCUGCGUgGCCCu -3'
miRNA:   3'- cGUCUg---CCAGCGU-UGGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 56659 0.68 0.631146
Target:  5'- -uGGGCGGUCGCccCCCuCGCC-CCUu -3'
miRNA:   3'- cgUCUGCCAGCGuuGGGcGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 62038 0.68 0.650478
Target:  5'- cGUGGAagUGGUCcaGCAgguuGCCCaggGCGCCGCCg -3'
miRNA:   3'- -CGUCU--GCCAG--CGU----UGGG---CGCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 81741 0.68 0.660128
Target:  5'- cGCGGugGGUacCGCcaccuCCUGgGCgGCCUg -3'
miRNA:   3'- -CGUCugCCA--GCGuu---GGGCgCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 83759 0.67 0.697504
Target:  5'- --uGAgGGUCaGguACCCcggguacGCGCCGUCCg -3'
miRNA:   3'- cguCUgCCAG-CguUGGG-------CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 108918 0.67 0.706039
Target:  5'- cGCAGGgGGgCGCuguuccagguuuGCgCGCGCCucGCCCu -3'
miRNA:   3'- -CGUCUgCCaGCGu-----------UGgGCGCGG--CGGG- -5'
4037 3' -60.9 NC_001650.1 + 82376 0.67 0.726703
Target:  5'- aUAGGCGGUCGCcugcuggagcACCUGCuGCUGCggCCu -3'
miRNA:   3'- cGUCUGCCAGCGu---------UGGGCG-CGGCG--GG- -5'
4037 3' -60.9 NC_001650.1 + 115127 0.67 0.735984
Target:  5'- aCAGACGcUCGCcucCCUGUGCgCGCUCc -3'
miRNA:   3'- cGUCUGCcAGCGuu-GGGCGCG-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.