miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 81741 0.68 0.660128
Target:  5'- cGCGGugGGUacCGCcaccuCCUGgGCgGCCUg -3'
miRNA:   3'- -CGUCugCCA--GCGuu---GGGCgCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 117287 0.67 0.698454
Target:  5'- -aGGACGc-CGCcAUCCGCGCCccgGCCCc -3'
miRNA:   3'- cgUCUGCcaGCGuUGGGCGCGG---CGGG- -5'
4037 3' -60.9 NC_001650.1 + 160465 0.67 0.70793
Target:  5'- uCGGGCGGgucucCGCccCCCGCG-CGCCg -3'
miRNA:   3'- cGUCUGCCa----GCGuuGGGCGCgGCGGg -5'
4037 3' -60.9 NC_001650.1 + 82376 0.67 0.726703
Target:  5'- aUAGGCGGUCGCcugcuggagcACCUGCuGCUGCggCCu -3'
miRNA:   3'- cGUCUGCCAGCGu---------UGGGCG-CGGCG--GG- -5'
4037 3' -60.9 NC_001650.1 + 109431 0.67 0.726703
Target:  5'- gGUAGAUGGcCagguuauccaGCAgGCCCaGCauGCCGCCCg -3'
miRNA:   3'- -CGUCUGCCaG----------CGU-UGGG-CG--CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 12177 0.66 0.745184
Target:  5'- -aAGAUGGcCGCcuccccACCaCGUgGCCGCCCc -3'
miRNA:   3'- cgUCUGCCaGCGu-----UGG-GCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 38475 0.66 0.745184
Target:  5'- gGCGGACcugccCGCcauGGCCC-UGCCGCCCu -3'
miRNA:   3'- -CGUCUGcca--GCG---UUGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 62391 0.72 0.454076
Target:  5'- cGCgAGACGGUuccCGCGcccccguuGCCCcCGCCGCUCc -3'
miRNA:   3'- -CG-UCUGCCA---GCGU--------UGGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 21174 0.72 0.436889
Target:  5'- gGCGGGCGG-CGCGGgUUGCGaCCGUCUg -3'
miRNA:   3'- -CGUCUGCCaGCGUUgGGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 59036 0.66 0.781024
Target:  5'- gGCGGGaucuucUGGcCGCcuuCCCGCGuCCGUCUg -3'
miRNA:   3'- -CGUCU------GCCaGCGuu-GGGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 20688 0.71 0.480525
Target:  5'- aCGGGgGGUCugGugCCGgGCCGCCCc -3'
miRNA:   3'- cGUCUgCCAGcgUugGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 97430 0.71 0.498569
Target:  5'- aGCAGAucuucgUGGcCGcCAACCUGCGCUcCCCg -3'
miRNA:   3'- -CGUCU------GCCaGC-GUUGGGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 146634 0.7 0.535512
Target:  5'- aCAGGCgcucGGcCGCcGCCCGCaCCGCCUc -3'
miRNA:   3'- cGUCUG----CCaGCGuUGGGCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 146970 0.69 0.573369
Target:  5'- gGCAu-CGGgggCGCAcuccACCCGC-CUGCCCa -3'
miRNA:   3'- -CGUcuGCCa--GCGU----UGGGCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 58003 0.66 0.772224
Target:  5'- cGC-GACGacUCGCucCUCGCccGCCGCCCc -3'
miRNA:   3'- -CGuCUGCc-AGCGuuGGGCG--CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 56999 0.69 0.592541
Target:  5'- gGCcauGuCGGUCaGCAuguCCUcCGCCGCCCg -3'
miRNA:   3'- -CGu--CuGCCAG-CGUu--GGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 104492 0.66 0.793143
Target:  5'- uUAGGaaGUCuGCccagagcccuacguGCCCGCGCuCGCCCg -3'
miRNA:   3'- cGUCUgcCAG-CGu-------------UGGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 22055 0.7 0.526179
Target:  5'- -aAGGCGGaCGC-GCUCGCcaaGCUGCCCg -3'
miRNA:   3'- cgUCUGCCaGCGuUGGGCG---CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 81738 0.67 0.717349
Target:  5'- uGCAGuACGaGUC-CAGCaCCGCGCUGUa- -3'
miRNA:   3'- -CGUC-UGC-CAGcGUUG-GGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 70978 0.67 0.698454
Target:  5'- cCAGGCuGGUgGaCAACCCcaacGCGaCGCCCu -3'
miRNA:   3'- cGUCUG-CCAgC-GUUGGG----CGCgGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.