miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 5' -52.4 NC_001650.1 + 88518 0.66 0.988917
Target:  5'- gGAGGAa---GCGGggGCGCCGguCUCu -3'
miRNA:   3'- -CUUCUguugUGCCgaUGUGGCguGAG- -5'
4037 5' -52.4 NC_001650.1 + 54211 0.66 0.988917
Target:  5'- uGAGGCc-CGCGGCcucgucccGCGCCGCcCUCa -3'
miRNA:   3'- cUUCUGuuGUGCCGa-------UGUGGCGuGAG- -5'
4037 5' -52.4 NC_001650.1 + 134460 0.66 0.988917
Target:  5'- uGAGGC-ACAcCGGCUgcGCGCCGgGCa- -3'
miRNA:   3'- cUUCUGuUGU-GCCGA--UGUGGCgUGag -5'
4037 5' -52.4 NC_001650.1 + 147519 0.66 0.987427
Target:  5'- --uGGCGGCAC-GCUGCGgCUGCACa- -3'
miRNA:   3'- cuuCUGUUGUGcCGAUGU-GGCGUGag -5'
4037 5' -52.4 NC_001650.1 + 20343 0.66 0.987427
Target:  5'- -uGGGCu--GCGGCUACGCCgGUACa- -3'
miRNA:   3'- cuUCUGuugUGCCGAUGUGG-CGUGag -5'
4037 5' -52.4 NC_001650.1 + 138814 0.66 0.987427
Target:  5'- --uGGCGGCAC-GCUGCGgCUGCACa- -3'
miRNA:   3'- cuuCUGUUGUGcCGAUGU-GGCGUGag -5'
4037 5' -52.4 NC_001650.1 + 118710 0.66 0.987427
Target:  5'- aGAAGGCcgccauGCGCGcguacauCUGCAgCGCGCUCu -3'
miRNA:   3'- -CUUCUGu-----UGUGCc------GAUGUgGCGUGAG- -5'
4037 5' -52.4 NC_001650.1 + 131231 0.66 0.985788
Target:  5'- cGAGGCAGCGCGcCUcgACGCgGCAC-Cg -3'
miRNA:   3'- cUUCUGUUGUGCcGA--UGUGgCGUGaG- -5'
4037 5' -52.4 NC_001650.1 + 38064 0.66 0.985788
Target:  5'- gGggGACAGgACgGGCguggGCACC-CugUCc -3'
miRNA:   3'- -CuuCUGUUgUG-CCGa---UGUGGcGugAG- -5'
4037 5' -52.4 NC_001650.1 + 88494 0.66 0.985788
Target:  5'- -cGGGCGGgGCGGggACGCCGgGCg- -3'
miRNA:   3'- cuUCUGUUgUGCCgaUGUGGCgUGag -5'
4037 5' -52.4 NC_001650.1 + 128474 0.66 0.985788
Target:  5'- -cAGGCuGCugGGCUuCGCgGCGCg- -3'
miRNA:   3'- cuUCUGuUGugCCGAuGUGgCGUGag -5'
4037 5' -52.4 NC_001650.1 + 75964 0.66 0.984729
Target:  5'- -uGGACAGCAUcagcugaccccugaaGGCgUugACCGC-CUCg -3'
miRNA:   3'- cuUCUGUUGUG---------------CCG-AugUGGCGuGAG- -5'
4037 5' -52.4 NC_001650.1 + 103583 0.66 0.98399
Target:  5'- aGggGACGcaccCGCGGU--CAUCGCACUg -3'
miRNA:   3'- -CuuCUGUu---GUGCCGauGUGGCGUGAg -5'
4037 5' -52.4 NC_001650.1 + 68899 0.66 0.98399
Target:  5'- -uAGACGgccauGCGCGGCgggUACACguaccaGCGCUCu -3'
miRNA:   3'- cuUCUGU-----UGUGCCG---AUGUGg-----CGUGAG- -5'
4037 5' -52.4 NC_001650.1 + 21677 0.66 0.983801
Target:  5'- --cGACGGCGCGGgggggccCUGCACC-CugUCc -3'
miRNA:   3'- cuuCUGUUGUGCC-------GAUGUGGcGugAG- -5'
4037 5' -52.4 NC_001650.1 + 81966 0.66 0.983611
Target:  5'- ---uGCAGCAccugcgcCGGCUGCGCCGUcuggugggaggcgGCUCc -3'
miRNA:   3'- cuucUGUUGU-------GCCGAUGUGGCG-------------UGAG- -5'
4037 5' -52.4 NC_001650.1 + 132896 0.66 0.982025
Target:  5'- -uGGugGAgGCGGUgGCGCC-CGCUCc -3'
miRNA:   3'- cuUCugUUgUGCCGaUGUGGcGUGAG- -5'
4037 5' -52.4 NC_001650.1 + 83697 0.66 0.982025
Target:  5'- cGAGACcGCGC-GCUACuccCCGCACa- -3'
miRNA:   3'- cUUCUGuUGUGcCGAUGu--GGCGUGag -5'
4037 5' -52.4 NC_001650.1 + 72774 0.66 0.982025
Target:  5'- --uGGCAGgGCgGGCUggccucGCGCCGC-CUCa -3'
miRNA:   3'- cuuCUGUUgUG-CCGA------UGUGGCGuGAG- -5'
4037 5' -52.4 NC_001650.1 + 133473 0.66 0.979883
Target:  5'- cAGGugGugGCGGCgccCACCGCGg-- -3'
miRNA:   3'- cUUCugUugUGCCGau-GUGGCGUgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.