miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4038 3' -61.7 NC_001650.1 + 71390 0.65 0.688871
Target:  5'- cGGCgcgCUCCA-GGCCGCCUuucccgaggcccccGAGCGc- -3'
miRNA:   3'- uUCGa--GAGGUcCCGGCGGA--------------CUCGCuc -5'
4038 3' -61.7 NC_001650.1 + 55945 0.66 0.682009
Target:  5'- uGGCUCUCCAuGGGCCccacccCCUcGGGCa-- -3'
miRNA:   3'- uUCGAGAGGU-CCCGGc-----GGA-CUCGcuc -5'
4038 3' -61.7 NC_001650.1 + 63929 0.66 0.682009
Target:  5'- cGAGcCUgUCCAGGGaCGCCU--GCGGGu -3'
miRNA:   3'- -UUC-GAgAGGUCCCgGCGGAcuCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 25965 0.66 0.682009
Target:  5'- cAGGC-CUCCAcGGCCGCCaGcccccuGGUGAGg -3'
miRNA:   3'- -UUCGaGAGGUcCCGGCGGaC------UCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 153803 0.66 0.682009
Target:  5'- cGAGCgcCUCCAGGG-CGCCcucuGCGGGc -3'
miRNA:   3'- -UUCGa-GAGGUCCCgGCGGacu-CGCUC- -5'
4038 3' -61.7 NC_001650.1 + 133885 0.66 0.672175
Target:  5'- gGGGCUCgaggaggCCGGGGCCGggaGGGaCGAGg -3'
miRNA:   3'- -UUCGAGa------GGUCCCGGCggaCUC-GCUC- -5'
4038 3' -61.7 NC_001650.1 + 105253 0.66 0.672175
Target:  5'- -cGCUCUCU-GGGCCGCg-GGGCa-- -3'
miRNA:   3'- uuCGAGAGGuCCCGGCGgaCUCGcuc -5'
4038 3' -61.7 NC_001650.1 + 132427 0.66 0.672175
Target:  5'- gGAGgUCUUCGGgaggcaGGCCGCCUG-GCuGGGg -3'
miRNA:   3'- -UUCgAGAGGUC------CCGGCGGACuCG-CUC- -5'
4038 3' -61.7 NC_001650.1 + 56363 0.66 0.672175
Target:  5'- --uUUCUCCAGGcGCuCGCCcacGGGCGAa -3'
miRNA:   3'- uucGAGAGGUCC-CG-GCGGa--CUCGCUc -5'
4038 3' -61.7 NC_001650.1 + 76834 0.66 0.666259
Target:  5'- cGAGCgagCggaUAGGGCCGCCgcgcagcuggcgaucUGcAGCGAGg -3'
miRNA:   3'- -UUCGa--Gag-GUCCCGGCGG---------------AC-UCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 129285 0.67 0.612794
Target:  5'- aAAGCccugccaaaaaUC-CCccGGCCGCCcGAGCGAGg -3'
miRNA:   3'- -UUCG-----------AGaGGucCCGGCGGaCUCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 133306 0.67 0.612794
Target:  5'- gGGGCUgC-CCAGGaGgCGCC-GGGCGAGg -3'
miRNA:   3'- -UUCGA-GaGGUCC-CgGCGGaCUCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 135034 0.67 0.602903
Target:  5'- --uCUCUCCAGGGCgGCCaccucAGCGGc -3'
miRNA:   3'- uucGAGAGGUCCCGgCGGac---UCGCUc -5'
4038 3' -61.7 NC_001650.1 + 56829 0.67 0.602903
Target:  5'- cGGGCUCU-CGGGGCU-CCUG-GCGGGc -3'
miRNA:   3'- -UUCGAGAgGUCCCGGcGGACuCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 129998 0.67 0.593033
Target:  5'- uAGGUUCgCCGGGaGCCuguaacccugaGCCUGGGCGGc -3'
miRNA:   3'- -UUCGAGaGGUCC-CGG-----------CGGACUCGCUc -5'
4038 3' -61.7 NC_001650.1 + 79089 0.67 0.593033
Target:  5'- cGGGCcuggCUCCGGGcGCgGCCgcucggcGGGCGGGa -3'
miRNA:   3'- -UUCGa---GAGGUCC-CGgCGGa------CUCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 66854 0.67 0.583189
Target:  5'- uGGGCUUggCGGGGCCgcgggaggcGCCggGGGCGGGg -3'
miRNA:   3'- -UUCGAGagGUCCCGG---------CGGa-CUCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 58391 0.67 0.583189
Target:  5'- cAGGCUCUCgGGGGCCGgggacgcguagcCCUccGCGAu -3'
miRNA:   3'- -UUCGAGAGgUCCCGGC------------GGAcuCGCUc -5'
4038 3' -61.7 NC_001650.1 + 81572 0.67 0.573379
Target:  5'- gAGGCgaaCUCCAccagggccucgGGGUCGCCcGAcGCGAGg -3'
miRNA:   3'- -UUCGa--GAGGU-----------CCCGGCGGaCU-CGCUC- -5'
4038 3' -61.7 NC_001650.1 + 184156 0.68 0.563608
Target:  5'- gGGGgUUUgUGGGGCUGCCUGGGaUGAGg -3'
miRNA:   3'- -UUCgAGAgGUCCCGGCGGACUC-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.