miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4038 3' -61.7 NC_001650.1 + 164717 1.06 0.001288
Target:  5'- gAAGCUCUCCAGGGCCGCCUGAGCGAGg -3'
miRNA:   3'- -UUCGAGAGGUCCCGGCGGACUCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 26168 0.78 0.130711
Target:  5'- cAGGgUUUCCGGGGCCGCCUGcGGCGuGu -3'
miRNA:   3'- -UUCgAGAGGUCCCGGCGGAC-UCGCuC- -5'
4038 3' -61.7 NC_001650.1 + 42100 0.72 0.344788
Target:  5'- gGAGUgCUCCAGGaGCCGCgCgaGGGCGGGu -3'
miRNA:   3'- -UUCGaGAGGUCC-CGGCG-Ga-CUCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 122676 0.71 0.3677
Target:  5'- gGAGaCcCUCCuGGGCUGCCUGAGgCGGu -3'
miRNA:   3'- -UUC-GaGAGGuCCCGGCGGACUC-GCUc -5'
4038 3' -61.7 NC_001650.1 + 103852 0.7 0.431114
Target:  5'- cGGGCUCgguggggauggggaAGGGCCGCCUGGGCu-- -3'
miRNA:   3'- -UUCGAGagg-----------UCCCGGCGGACUCGcuc -5'
4038 3' -61.7 NC_001650.1 + 20907 0.7 0.433712
Target:  5'- -cGC-CgCCGGGGCCGCCgUGAG-GAGg -3'
miRNA:   3'- uuCGaGaGGUCCCGGCGG-ACUCgCUC- -5'
4038 3' -61.7 NC_001650.1 + 59964 0.69 0.460183
Target:  5'- cAGGCcccgCUCCAGGGUCaGCCgcaGGGCGGu -3'
miRNA:   3'- -UUCGa---GAGGUCCCGG-CGGa--CUCGCUc -5'
4038 3' -61.7 NC_001650.1 + 37743 0.69 0.460183
Target:  5'- uGGGCUCgcggcgCCcGGGCCGCCUaGGgccGCGGGu -3'
miRNA:   3'- -UUCGAGa-----GGuCCCGGCGGA-CU---CGCUC- -5'
4038 3' -61.7 NC_001650.1 + 104986 0.69 0.496758
Target:  5'- -uGCUCUUCAGGGCCuuguuuuccauCCUGAGCu-- -3'
miRNA:   3'- uuCGAGAGGUCCCGGc----------GGACUCGcuc -5'
4038 3' -61.7 NC_001650.1 + 88482 0.69 0.506107
Target:  5'- gGAGUUCUCCuccgggcggggcGGGGaCGCC-GGGCGGGa -3'
miRNA:   3'- -UUCGAGAGG------------UCCCgGCGGaCUCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 73013 0.69 0.506107
Target:  5'- -uGCUCcugCCugggggcgcGGGCCGCCUGAGCc-- -3'
miRNA:   3'- uuCGAGa--GGu--------CCCGGCGGACUCGcuc -5'
4038 3' -61.7 NC_001650.1 + 28309 0.68 0.515531
Target:  5'- cAGUUCUCCagguucGGGGCCuGCCUGAagGAGg -3'
miRNA:   3'- uUCGAGAGG------UCCCGG-CGGACUcgCUC- -5'
4038 3' -61.7 NC_001650.1 + 53579 0.68 0.525025
Target:  5'- uGGC-CUCCAGGGUCucuaugGCCUcGGUGAGg -3'
miRNA:   3'- uUCGaGAGGUCCCGG------CGGAcUCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 184156 0.68 0.563608
Target:  5'- gGGGgUUUgUGGGGCUGCCUGGGaUGAGg -3'
miRNA:   3'- -UUCgAGAgGUCCCGGCGGACUC-GCUC- -5'
4038 3' -61.7 NC_001650.1 + 17449 0.68 0.563608
Target:  5'- gGGGgUUUgUGGGGCUGCCUGGGaUGAGg -3'
miRNA:   3'- -UUCgAGAgGUCCCGGCGGACUC-GCUC- -5'
4038 3' -61.7 NC_001650.1 + 81572 0.67 0.573379
Target:  5'- gAGGCgaaCUCCAccagggccucgGGGUCGCCcGAcGCGAGg -3'
miRNA:   3'- -UUCGa--GAGGU-----------CCCGGCGGaCU-CGCUC- -5'
4038 3' -61.7 NC_001650.1 + 66854 0.67 0.583189
Target:  5'- uGGGCUUggCGGGGCCgcgggaggcGCCggGGGCGGGg -3'
miRNA:   3'- -UUCGAGagGUCCCGG---------CGGa-CUCGCUC- -5'
4038 3' -61.7 NC_001650.1 + 58391 0.67 0.583189
Target:  5'- cAGGCUCUCgGGGGCCGgggacgcguagcCCUccGCGAu -3'
miRNA:   3'- -UUCGAGAGgUCCCGGC------------GGAcuCGCUc -5'
4038 3' -61.7 NC_001650.1 + 129998 0.67 0.593033
Target:  5'- uAGGUUCgCCGGGaGCCuguaacccugaGCCUGGGCGGc -3'
miRNA:   3'- -UUCGAGaGGUCC-CGG-----------CGGACUCGCUc -5'
4038 3' -61.7 NC_001650.1 + 79089 0.67 0.593033
Target:  5'- cGGGCcuggCUCCGGGcGCgGCCgcucggcGGGCGGGa -3'
miRNA:   3'- -UUCGa---GAGGUCC-CGgCGGa------CUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.