miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4038 5' -50 NC_001650.1 + 123308 0.66 0.998672
Target:  5'- gCGCGCGCacgCGAGUGgGGAGGGGGAa- -3'
miRNA:   3'- -GCGCGCGa--GUUUGUgUCUCUCUUUga -5'
4038 5' -50 NC_001650.1 + 173512 0.66 0.998672
Target:  5'- gGCGCGCgagAGAgAUAGAGAGucuCUg -3'
miRNA:   3'- gCGCGCGag-UUUgUGUCUCUCuuuGA- -5'
4038 5' -50 NC_001650.1 + 6805 0.66 0.998672
Target:  5'- gGCGCGCgagAGAgAUAGAGAGucuCUg -3'
miRNA:   3'- gCGCGCGag-UUUgUGUCUCUCuuuGA- -5'
4038 5' -50 NC_001650.1 + 107401 0.66 0.998568
Target:  5'- cCGCuCGCUCGcGACGCugcaccccuucguGAGGGAGGCg -3'
miRNA:   3'- -GCGcGCGAGU-UUGUGu------------CUCUCUUUGa -5'
4038 5' -50 NC_001650.1 + 66639 0.66 0.998398
Target:  5'- aCGUGUucGC-CAAGCugGG-GAGggGCUa -3'
miRNA:   3'- -GCGCG--CGaGUUUGugUCuCUCuuUGA- -5'
4038 5' -50 NC_001650.1 + 69816 0.66 0.998368
Target:  5'- cCGcCGCGCcCAAGCGCucggaaaagaggaAGAGGGAGGgUg -3'
miRNA:   3'- -GC-GCGCGaGUUUGUG-------------UCUCUCUUUgA- -5'
4038 5' -50 NC_001650.1 + 28670 0.66 0.998077
Target:  5'- aGCGCGCg---GC-CAGGGAGAccguGCUg -3'
miRNA:   3'- gCGCGCGaguuUGuGUCUCUCUu---UGA- -5'
4038 5' -50 NC_001650.1 + 28618 0.66 0.998077
Target:  5'- gCGCGCGC-CAAcuACGCGGccuccaGGggGCUg -3'
miRNA:   3'- -GCGCGCGaGUU--UGUGUCuc----UCuuUGA- -5'
4038 5' -50 NC_001650.1 + 41322 0.66 0.998077
Target:  5'- aGCGCGC-CGGcuGCACGGGccGggGCg -3'
miRNA:   3'- gCGCGCGaGUU--UGUGUCUcuCuuUGa -5'
4038 5' -50 NC_001650.1 + 24003 0.66 0.998077
Target:  5'- gCGCGCGCcgUCcuGCACcugAGGGccaAGAGGCUg -3'
miRNA:   3'- -GCGCGCG--AGuuUGUG---UCUC---UCUUUGA- -5'
4038 5' -50 NC_001650.1 + 112604 0.66 0.997744
Target:  5'- gGCGCGCccaccgcguaaaagUCAAACAgGGGguggaccuccaguuuGAGGAGCUc -3'
miRNA:   3'- gCGCGCG--------------AGUUUGUgUCU---------------CUCUUUGA- -5'
4038 5' -50 NC_001650.1 + 141702 0.66 0.997744
Target:  5'- gGCGCGCcgguggccaccugccCAAACACacuGGGGAGAAAa- -3'
miRNA:   3'- gCGCGCGa--------------GUUUGUG---UCUCUCUUUga -5'
4038 5' -50 NC_001650.1 + 100536 0.66 0.997704
Target:  5'- gCGCGCGgUCu--CGCGGAuGAGAucGCg -3'
miRNA:   3'- -GCGCGCgAGuuuGUGUCU-CUCUu-UGa -5'
4038 5' -50 NC_001650.1 + 52507 0.66 0.997704
Target:  5'- gGUGgGCgUCAGAgcCGCAGGGAGggGg- -3'
miRNA:   3'- gCGCgCG-AGUUU--GUGUCUCUCuuUga -5'
4038 5' -50 NC_001650.1 + 107830 0.66 0.997273
Target:  5'- aGCGUGCUCAccugcucuGACAaaaAGGGggGCg -3'
miRNA:   3'- gCGCGCGAGU--------UUGUgucUCUCuuUGa -5'
4038 5' -50 NC_001650.1 + 57772 0.67 0.996776
Target:  5'- gCGCGCGCUCGGACgGCcGAuAGGAu-- -3'
miRNA:   3'- -GCGCGCGAGUUUG-UGuCUcUCUUuga -5'
4038 5' -50 NC_001650.1 + 142915 0.67 0.996776
Target:  5'- gGCGCGCUCGGGCGauuuGAGuuuACa -3'
miRNA:   3'- gCGCGCGAGUUUGUgucuCUCuu-UGa -5'
4038 5' -50 NC_001650.1 + 160484 0.67 0.996206
Target:  5'- cCGCGCGCcgCGAggacGCGCAG-GAGGucACg -3'
miRNA:   3'- -GCGCGCGa-GUU----UGUGUCuCUCUu-UGa -5'
4038 5' -50 NC_001650.1 + 152268 0.67 0.996206
Target:  5'- cCGCGaaGCUCGGugGCcGAGAGcAGCg -3'
miRNA:   3'- -GCGCg-CGAGUUugUGuCUCUCuUUGa -5'
4038 5' -50 NC_001650.1 + 129336 0.67 0.996206
Target:  5'- aCGCG-GCcCAGGaGCAGAGGGAGAUc -3'
miRNA:   3'- -GCGCgCGaGUUUgUGUCUCUCUUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.