miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
404 3' -56.1 AC_000011.1 + 16267 0.66 0.566319
Target:  5'- uUCgccCCCCGgcGGCGCguGCAgugGCGCGGgCg -3'
miRNA:   3'- -AGaa-GGGGUa-CCGCG--UGU---UGUGCCgG- -5'
404 3' -56.1 AC_000011.1 + 16623 0.66 0.555236
Target:  5'- gCUUgaaCCCccGGCGCGgCGcCGCGGUCg -3'
miRNA:   3'- aGAAg--GGGuaCCGCGU-GUuGUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 16866 0.75 0.16041
Target:  5'- ---aCCCC--GGCGCaaguACGGCGCGGCCa -3'
miRNA:   3'- agaaGGGGuaCCGCG----UGUUGUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 16867 0.72 0.235554
Target:  5'- gUCUgcacCUCCAUGGUGCugGuGCugGGCUu -3'
miRNA:   3'- -AGAa---GGGGUACCGCGugU-UGugCCGG- -5'
404 3' -56.1 AC_000011.1 + 16927 0.67 0.500941
Target:  5'- aUCaUCCCCAcgccgGGCuacCGCGGCACGcGCUu -3'
miRNA:   3'- -AGaAGGGGUa----CCGc--GUGUUGUGC-CGG- -5'
404 3' -56.1 AC_000011.1 + 17480 0.68 0.449111
Target:  5'- uUCgUCCC--UGGCucCGCGACACGGCa -3'
miRNA:   3'- -AGaAGGGguACCGc-GUGUUGUGCCGg -5'
404 3' -56.1 AC_000011.1 + 18136 0.74 0.189549
Target:  5'- ---gCCCCcgGGuCGCGCGcgggcCACGGCCa -3'
miRNA:   3'- agaaGGGGuaCC-GCGUGUu----GUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 18314 0.71 0.275931
Target:  5'- gCUgCCCCAgugGGCGUACAugcACAUcGCCg -3'
miRNA:   3'- aGAaGGGGUa--CCGCGUGU---UGUGcCGG- -5'
404 3' -56.1 AC_000011.1 + 19818 0.67 0.500941
Target:  5'- --gUCCaCCAgcgagGGCGcCACcACcCGGCCg -3'
miRNA:   3'- agaAGG-GGUa----CCGC-GUGuUGuGCCGG- -5'
404 3' -56.1 AC_000011.1 + 20092 1.12 0.000288
Target:  5'- uUCUUCCCCAUGGCGCACAACACGGCCu -3'
miRNA:   3'- -AGAAGGGGUACCGCGUGUUGUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 20230 0.76 0.131565
Target:  5'- aUCUccaUCCCCu---CGCGCAACugGGCCg -3'
miRNA:   3'- -AGA---AGGGGuaccGCGUGUUGugCCGG- -5'
404 3' -56.1 AC_000011.1 + 20870 0.68 0.419471
Target:  5'- aCUUCauguCCAUgGGCGCGCucaccGACcuCGGCCa -3'
miRNA:   3'- aGAAGg---GGUA-CCGCGUG-----UUGu-GCCGG- -5'
404 3' -56.1 AC_000011.1 + 21204 0.69 0.372809
Target:  5'- gCUUCCCgggauuCAUGGCcccGCACAAgcUGGCCu -3'
miRNA:   3'- aGAAGGG------GUACCG---CGUGUUguGCCGG- -5'
404 3' -56.1 AC_000011.1 + 21482 0.67 0.479872
Target:  5'- aCUUUUCCAgGGUGaCGCAGCGguccucggUGGCCa -3'
miRNA:   3'- aGAAGGGGUaCCGC-GUGUUGU--------GCCGG- -5'
404 3' -56.1 AC_000011.1 + 22084 0.66 0.548617
Target:  5'- ---aCCCCGUGuaccgcaacucccgcGCGCAgAACGCGGgucCCa -3'
miRNA:   3'- agaaGGGGUAC---------------CGCGUgUUGUGCC---GG- -5'
404 3' -56.1 AC_000011.1 + 22168 0.68 0.439101
Target:  5'- gUCUgccUUCCCAUGGUGgGCAcGCACccgGGCUu -3'
miRNA:   3'- -AGA---AGGGGUACCGCgUGU-UGUG---CCGG- -5'
404 3' -56.1 AC_000011.1 + 22894 0.67 0.511627
Target:  5'- uUCUUCaCCAUcaucuuaGCGCuaGCAGcCGCGGCCa -3'
miRNA:   3'- -AGAAGgGGUAc------CGCG--UGUU-GUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 24369 0.7 0.324895
Target:  5'- --gUCCCCAgaguuuggaagagcGGCGCAaacuCAugAUGGCCg -3'
miRNA:   3'- agaAGGGGUa-------------CCGCGU----GUugUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 24669 0.7 0.305033
Target:  5'- --cUCCCCgcgcaggGUGGUGUGCAGCACGuucuGCCc -3'
miRNA:   3'- agaAGGGG-------UACCGCGUGUUGUGC----CGG- -5'
404 3' -56.1 AC_000011.1 + 25447 0.67 0.459246
Target:  5'- aUUUCUggAUGGCuuGCAAUugGGCCa -3'
miRNA:   3'- aGAAGGggUACCGcgUGUUGugCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.