miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
404 5' -56.7 AC_000011.1 + 8960 0.66 0.466952
Target:  5'- -uGGUCAUGC-GCGCcGGCGAUcCCGAg -3'
miRNA:   3'- cuCCGGUACGaCGCG-UUGCUGuGGUU- -5'
404 5' -56.7 AC_000011.1 + 13352 0.66 0.466952
Target:  5'- -cGGCCgcgaggGUGCUGcCGCGGCGGugcccgaggcCGCCAGu -3'
miRNA:   3'- cuCCGG------UACGAC-GCGUUGCU----------GUGGUU- -5'
404 5' -56.7 AC_000011.1 + 4345 0.66 0.466952
Target:  5'- uGGGGuUCAUGUUGUGCAG-GAcCACCAGc -3'
miRNA:   3'- -CUCC-GGUACGACGCGUUgCU-GUGGUU- -5'
404 5' -56.7 AC_000011.1 + 24903 0.66 0.446202
Target:  5'- cAGGCC--GUUGCGCAGCGucaGCCu- -3'
miRNA:   3'- cUCCGGuaCGACGCGUUGCug-UGGuu -5'
404 5' -56.7 AC_000011.1 + 12265 0.66 0.446202
Target:  5'- aAGGCCAU-CcGCgGCGACGAgGCCGg -3'
miRNA:   3'- cUCCGGUAcGaCG-CGUUGCUgUGGUu -5'
404 5' -56.7 AC_000011.1 + 2899 0.66 0.436021
Target:  5'- cGGGCUgcuuuGUGCUGUGCAAgGGCaauGCUAAg -3'
miRNA:   3'- cUCCGG-----UACGACGCGUUgCUG---UGGUU- -5'
404 5' -56.7 AC_000011.1 + 12381 0.67 0.416068
Target:  5'- cGAGGCCGUgGCccaGCGCgAGCGGuucCACCGc -3'
miRNA:   3'- -CUCCGGUA-CGa--CGCG-UUGCU---GUGGUu -5'
404 5' -56.7 AC_000011.1 + 13110 0.67 0.413124
Target:  5'- uGGGCucCAUGUUGCGCGcggucaugucgagcGCGGCGCUGGg -3'
miRNA:   3'- cUCCG--GUACGACGCGU--------------UGCUGUGGUU- -5'
404 5' -56.7 AC_000011.1 + 15931 0.67 0.406304
Target:  5'- -cGGCCAcgGCgGCgGCAGCGGCcaucGCCAGc -3'
miRNA:   3'- cuCCGGUa-CGaCG-CGUUGCUG----UGGUU- -5'
404 5' -56.7 AC_000011.1 + 9750 0.67 0.396684
Target:  5'- -cGGCCAUGCcccagGCGUGGuccUGACACCu- -3'
miRNA:   3'- cuCCGGUACGa----CGCGUU---GCUGUGGuu -5'
404 5' -56.7 AC_000011.1 + 17064 0.67 0.387213
Target:  5'- -cGGCgGUGCgGCGaCGGCGGCGgCGAg -3'
miRNA:   3'- cuCCGgUACGaCGC-GUUGCUGUgGUU- -5'
404 5' -56.7 AC_000011.1 + 9842 0.67 0.374206
Target:  5'- -cGGCCGUGCaUGCGCGugagcccgaagccGCGcuggggcuggacgaGCGCCAGg -3'
miRNA:   3'- cuCCGGUACG-ACGCGU-------------UGC--------------UGUGGUU- -5'
404 5' -56.7 AC_000011.1 + 15977 0.67 0.368722
Target:  5'- cGAGGgaaCGUGUacugggUGCGCGACGcCGCCAc -3'
miRNA:   3'- -CUCCg--GUACG------ACGCGUUGCuGUGGUu -5'
404 5' -56.7 AC_000011.1 + 12256 0.68 0.359707
Target:  5'- uGGGGU--UGgaGCGCGAgGGCACCAc -3'
miRNA:   3'- -CUCCGguACgaCGCGUUgCUGUGGUu -5'
404 5' -56.7 AC_000011.1 + 15768 0.68 0.349969
Target:  5'- aAGaGCCGgcgGCgGCGCAucgcccgGCGGCACCGGa -3'
miRNA:   3'- cUC-CGGUa--CGaCGCGU-------UGCUGUGGUU- -5'
404 5' -56.7 AC_000011.1 + 12100 0.68 0.325205
Target:  5'- cAGGCCAUGCaaCGCAucAUGGCGCUGAc -3'
miRNA:   3'- cUCCGGUACGacGCGU--UGCUGUGGUU- -5'
404 5' -56.7 AC_000011.1 + 9133 0.7 0.252653
Target:  5'- cGAGGCCAUggaacguuuggaggcGCUGgGCGACGuCAgCGAg -3'
miRNA:   3'- -CUCCGGUA---------------CGACgCGUUGCuGUgGUU- -5'
404 5' -56.7 AC_000011.1 + 21387 0.71 0.218018
Target:  5'- aGGGCC-UGCUGCGCcGCaGCGCCc- -3'
miRNA:   3'- cUCCGGuACGACGCGuUGcUGUGGuu -5'
404 5' -56.7 AC_000011.1 + 24844 0.71 0.206256
Target:  5'- cAGGCUgacGCUGCGCAACGGCcugcCCGAc -3'
miRNA:   3'- cUCCGGua-CGACGCGUUGCUGu---GGUU- -5'
404 5' -56.7 AC_000011.1 + 9415 0.73 0.150994
Target:  5'- cGAGaCCAUGCgacgccgGCGCGGCGAgACCAu -3'
miRNA:   3'- -CUCcGGUACGa------CGCGUUGCUgUGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.