miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 29730 0.66 0.830606
Target:  5'- uCUGCUCCCCCUucaggugccugaugGCCCugGUcaaugacuuccucucGgACAAGg -3'
miRNA:   3'- -GGUGAGGGGGG--------------CGGGugCG---------------UgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 134318 0.66 0.829805
Target:  5'- cCCGuCUUCCCCC-CCgGCGCccccCGCGGGc -3'
miRNA:   3'- -GGU-GAGGGGGGcGGgUGCGu---GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 63009 0.66 0.829805
Target:  5'- aCCGCUCCaggaaggccuCCaCCGUCCGCcggGCGCACc-- -3'
miRNA:   3'- -GGUGAGG----------GG-GGCGGGUG---CGUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 142888 0.66 0.829805
Target:  5'- gCCGCcgCCgCCCCgGCCCgugcagccgGCGCGCuCGGGc -3'
miRNA:   3'- -GGUGa-GG-GGGG-CGGG---------UGCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 73129 0.66 0.829805
Target:  5'- aCCGC-CgCCCUCGCgCCugGCgccGCugGAGc -3'
miRNA:   3'- -GGUGaG-GGGGGCG-GGugCG---UGugUUC- -5'
4040 3' -59.8 NC_001650.1 + 73285 0.66 0.829805
Target:  5'- -aGCUCCaUCCUgguGCCCGCGCACGu--- -3'
miRNA:   3'- ggUGAGG-GGGG---CGGGUGCGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 137261 0.66 0.829805
Target:  5'- gCCACaggUCCaCCgCCGuCCCGgGCugGCAGa -3'
miRNA:   3'- -GGUG---AGG-GG-GGC-GGGUgCGugUGUUc -5'
4040 3' -59.8 NC_001650.1 + 49224 0.66 0.829805
Target:  5'- cUCAC-CCCCCUGCgggcgcucgaCUACGUGCACGu- -3'
miRNA:   3'- -GGUGaGGGGGGCG----------GGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 105454 0.66 0.826584
Target:  5'- cCCGCUgcCgCCCCCGaagaaagcaccuaUCACGCGCACGu- -3'
miRNA:   3'- -GGUGA--G-GGGGGCg------------GGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 157429 0.66 0.821704
Target:  5'- gCgGCUCCCCCgGCCCGCuC-CuCAAa -3'
miRNA:   3'- -GgUGAGGGGGgCGGGUGcGuGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 155214 0.66 0.821704
Target:  5'- gUACUCCagCCCGUCCGCGCGg----- -3'
miRNA:   3'- gGUGAGGg-GGGCGGGUGCGUguguuc -5'
4040 3' -59.8 NC_001650.1 + 85759 0.66 0.821704
Target:  5'- uCCACaCCCUCCGCCCcCcuCACACc-- -3'
miRNA:   3'- -GGUGaGGGGGGCGGGuGc-GUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 105373 0.66 0.821704
Target:  5'- aC-CUCCcguCCCCGUCCGCGa--GCAGGg -3'
miRNA:   3'- gGuGAGG---GGGGCGGGUGCgugUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 114193 0.66 0.821704
Target:  5'- -aGCUCgUCCaCCGCCCGCuccaGgACGCAGGa -3'
miRNA:   3'- ggUGAG-GGG-GGCGGGUG----CgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 131987 0.66 0.821704
Target:  5'- aCGCUgCCCCCGCUggaCAUGgGCcuCAAGa -3'
miRNA:   3'- gGUGAgGGGGGCGG---GUGCgUGu-GUUC- -5'
4040 3' -59.8 NC_001650.1 + 101796 0.66 0.821704
Target:  5'- cCCACggccgUCCCCUGCCa--GUugGCGGGc -3'
miRNA:   3'- -GGUGa----GGGGGGCGGgugCGugUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 76031 0.66 0.821704
Target:  5'- aCGCgccagCUUCuuGCCCACGUAgGCAGa -3'
miRNA:   3'- gGUGa----GGGGggCGGGUGCGUgUGUUc -5'
4040 3' -59.8 NC_001650.1 + 52547 0.66 0.813445
Target:  5'- gCAC-CUCCaCCGCCCcccucagggaggGgGCGCGCAGGc -3'
miRNA:   3'- gGUGaGGGG-GGCGGG------------UgCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 51225 0.66 0.813445
Target:  5'- cCCGCgCCCCCUcccaGCgugucucuaucCCGCGCGgGCGAGc -3'
miRNA:   3'- -GGUGaGGGGGG----CG-----------GGUGCGUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 182632 0.66 0.813445
Target:  5'- cCCGCUCuCCaCCUGgCCACGCccCAUAGc -3'
miRNA:   3'- -GGUGAG-GG-GGGCgGGUGCGu-GUGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.