miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 182632 0.66 0.813445
Target:  5'- cCCGCUCuCCaCCUGgCCACGCccCAUAGc -3'
miRNA:   3'- -GGUGAG-GG-GGGCgGGUGCGu-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 134318 0.66 0.829805
Target:  5'- cCCGuCUUCCCCC-CCgGCGCccccCGCGGGc -3'
miRNA:   3'- -GGU-GAGGGGGGcGGgUGCGu---GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 78839 0.66 0.787795
Target:  5'- -aGCcCCCCCUGCUCGCGgACggggACGGGa -3'
miRNA:   3'- ggUGaGGGGGGCGGGUGCgUG----UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 131987 0.66 0.821704
Target:  5'- aCGCUgCCCCCGCUggaCAUGgGCcuCAAGa -3'
miRNA:   3'- gGUGAgGGGGGCGG---GUGCgUGu-GUUC- -5'
4040 3' -59.8 NC_001650.1 + 71376 0.66 0.805036
Target:  5'- cCCAa-CCCCUgCGCCgGCGCGCucCAGGc -3'
miRNA:   3'- -GGUgaGGGGG-GCGGgUGCGUGu-GUUC- -5'
4040 3' -59.8 NC_001650.1 + 114193 0.66 0.821704
Target:  5'- -aGCUCgUCCaCCGCCCGCuccaGgACGCAGGa -3'
miRNA:   3'- ggUGAG-GGG-GGCGGGUG----CgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 117710 0.66 0.805036
Target:  5'- -gACggCCgCCCGCaCCGcCGCGCGCAGc -3'
miRNA:   3'- ggUGa-GGgGGGCG-GGU-GCGUGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 27082 0.66 0.805036
Target:  5'- cCCACUacaCCagCCUgGCCCAgGCGCuCAGGg -3'
miRNA:   3'- -GGUGA---GG--GGGgCGGGUgCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 48915 0.66 0.796483
Target:  5'- gUCACUCCCgCCGCCCugACGguggucaACACcucuGAGg -3'
miRNA:   3'- -GGUGAGGGgGGCGGG--UGCg------UGUG----UUC- -5'
4040 3' -59.8 NC_001650.1 + 93231 0.66 0.796483
Target:  5'- gCCACggCCgaaaCgCGCCCGCGCGCgACAu- -3'
miRNA:   3'- -GGUGa-GGg---GgGCGGGUGCGUG-UGUuc -5'
4040 3' -59.8 NC_001650.1 + 95810 0.66 0.787795
Target:  5'- gUACUCCCCCUcCCCGcCGC-CACc-- -3'
miRNA:   3'- gGUGAGGGGGGcGGGU-GCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 54199 0.66 0.813445
Target:  5'- -aGCUCCCgggCCGCCCAgGCu--CAGGg -3'
miRNA:   3'- ggUGAGGGg--GGCGGGUgCGuguGUUC- -5'
4040 3' -59.8 NC_001650.1 + 29730 0.66 0.830606
Target:  5'- uCUGCUCCCCCUucaggugccugaugGCCCugGUcaaugacuuccucucGgACAAGg -3'
miRNA:   3'- -GGUGAGGGGGG--------------CGGGugCG---------------UgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 155214 0.66 0.821704
Target:  5'- gUACUCCagCCCGUCCGCGCGg----- -3'
miRNA:   3'- gGUGAGGg-GGGCGGGUGCGUguguuc -5'
4040 3' -59.8 NC_001650.1 + 73285 0.66 0.829805
Target:  5'- -aGCUCCaUCCUgguGCCCGCGCACGu--- -3'
miRNA:   3'- ggUGAGG-GGGG---CGGGUGCGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 30948 0.66 0.799921
Target:  5'- cCCGCgcgacgUCCUCCuCCCACauggccaagcuguuuGCGCACGAGg -3'
miRNA:   3'- -GGUGa-----GGGGGGcGGGUG---------------CGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 142888 0.66 0.829805
Target:  5'- gCCGCcgCCgCCCCgGCCCgugcagccgGCGCGCuCGGGc -3'
miRNA:   3'- -GGUGa-GG-GGGG-CGGG---------UGCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 137261 0.66 0.829805
Target:  5'- gCCACaggUCCaCCgCCGuCCCGgGCugGCAGa -3'
miRNA:   3'- -GGUG---AGG-GG-GGC-GGGUgCGugUGUUc -5'
4040 3' -59.8 NC_001650.1 + 130585 0.66 0.787795
Target:  5'- -aGCUCCCUCgGCCaAUGagaGCGCAGGg -3'
miRNA:   3'- ggUGAGGGGGgCGGgUGCg--UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 49224 0.66 0.829805
Target:  5'- cUCAC-CCCCCUGCgggcgcucgaCUACGUGCACGu- -3'
miRNA:   3'- -GGUGaGGGGGGCG----------GGUGCGUGUGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.