miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 161857 0.66 0.805036
Target:  5'- gUC-CUCCCCgCUGCCCAC-CACcccCAGGu -3'
miRNA:   3'- -GGuGAGGGG-GGCGGGUGcGUGu--GUUC- -5'
4040 3' -59.8 NC_001650.1 + 105454 0.66 0.826584
Target:  5'- cCCGCUgcCgCCCCCGaagaaagcaccuaUCACGCGCACGu- -3'
miRNA:   3'- -GGUGA--G-GGGGGCg------------GGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 142888 0.66 0.829805
Target:  5'- gCCGCcgCCgCCCCgGCCCgugcagccgGCGCGCuCGGGc -3'
miRNA:   3'- -GGUGa-GG-GGGG-CGGG---------UGCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 131987 0.66 0.821704
Target:  5'- aCGCUgCCCCCGCUggaCAUGgGCcuCAAGa -3'
miRNA:   3'- gGUGAgGGGGGCGG---GUGCgUGu-GUUC- -5'
4040 3' -59.8 NC_001650.1 + 105373 0.66 0.821704
Target:  5'- aC-CUCCcguCCCCGUCCGCGa--GCAGGg -3'
miRNA:   3'- gGuGAGG---GGGGCGGGUGCgugUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 103315 0.66 0.796483
Target:  5'- uCCACUCgguCCCCCGUCUcCGUgACGCcAGa -3'
miRNA:   3'- -GGUGAG---GGGGGCGGGuGCG-UGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 52547 0.66 0.813445
Target:  5'- gCAC-CUCCaCCGCCCcccucagggaggGgGCGCGCAGGc -3'
miRNA:   3'- gGUGaGGGG-GGCGGG------------UgCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 158669 0.66 0.812611
Target:  5'- aCACUUUCCCCuuccucgGCCCACaCACAaAAGg -3'
miRNA:   3'- gGUGAGGGGGG-------CGGGUGcGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 130585 0.66 0.787795
Target:  5'- -aGCUCCCUCgGCCaAUGagaGCGCAGGg -3'
miRNA:   3'- ggUGAGGGGGgCGGgUGCg--UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 85759 0.66 0.821704
Target:  5'- uCCACaCCCUCCGCCCcCcuCACACc-- -3'
miRNA:   3'- -GGUGaGGGGGGCGGGuGc-GUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 29730 0.66 0.830606
Target:  5'- uCUGCUCCCCCUucaggugccugaugGCCCugGUcaaugacuuccucucGgACAAGg -3'
miRNA:   3'- -GGUGAGGGGGG--------------CGGGugCG---------------UgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 157429 0.66 0.821704
Target:  5'- gCgGCUCCCCCgGCCCGCuC-CuCAAa -3'
miRNA:   3'- -GgUGAGGGGGgCGGGUGcGuGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 94737 0.66 0.796483
Target:  5'- cCCACgcgaaCCCCGCCUcgGCGgcccaGCGCAGGa -3'
miRNA:   3'- -GGUGagg--GGGGCGGG--UGCg----UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 148204 0.66 0.787795
Target:  5'- gCGCcUCCCCCGaCCC-CGCcuuccagaucACGCAGGa -3'
miRNA:   3'- gGUGaGGGGGGC-GGGuGCG----------UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 57461 0.66 0.796483
Target:  5'- cCCAUUCCCCCgGgCCCcuCGC-CGCu-- -3'
miRNA:   3'- -GGUGAGGGGGgC-GGGu-GCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 51225 0.66 0.813445
Target:  5'- cCCGCgCCCCCUcccaGCgugucucuaucCCGCGCGgGCGAGc -3'
miRNA:   3'- -GGUGaGGGGGG----CG-----------GGUGCGUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 76031 0.66 0.821704
Target:  5'- aCGCgccagCUUCuuGCCCACGUAgGCAGa -3'
miRNA:   3'- gGUGa----GGGGggCGGGUGCGUgUGUUc -5'
4040 3' -59.8 NC_001650.1 + 72273 0.66 0.796483
Target:  5'- cCCGCgUCCuggaugcgCCCCGCgC-CGCACACcAGa -3'
miRNA:   3'- -GGUG-AGG--------GGGGCGgGuGCGUGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 117710 0.66 0.805036
Target:  5'- -gACggCCgCCCGCaCCGcCGCGCGCAGc -3'
miRNA:   3'- ggUGa-GGgGGGCG-GGU-GCGUGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 112586 0.67 0.742588
Target:  5'- gCCACaCCCCUggCGCCCGgCGCGCcCAc- -3'
miRNA:   3'- -GGUGaGGGGG--GCGGGU-GCGUGuGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.