miRNA display CGI


Results 81 - 100 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 95501 0.68 0.685514
Target:  5'- -gGCUCCCCCUcCCCGgCGCcCGCAc- -3'
miRNA:   3'- ggUGAGGGGGGcGGGU-GCGuGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 157262 0.68 0.695173
Target:  5'- gCCGC-CCCCUCggggcuguaGCCCAUGCGcCugGGGg -3'
miRNA:   3'- -GGUGaGGGGGG---------CGGGUGCGU-GugUUC- -5'
4040 3' -59.8 NC_001650.1 + 2414 0.68 0.699024
Target:  5'- cCCACUCCCUaaaucugcccggcaaCCGCCUACcuCACACc-- -3'
miRNA:   3'- -GGUGAGGGG---------------GGCGGGUGc-GUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 169121 0.68 0.699024
Target:  5'- cCCACUCCCUaaaucugcccggcaaCCGCCUACcuCACACc-- -3'
miRNA:   3'- -GGUGAGGGG---------------GGCGGGUGc-GUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 142108 0.68 0.704785
Target:  5'- aCACUCa-CCCGCCCuCGCGCGg--- -3'
miRNA:   3'- gGUGAGggGGGCGGGuGCGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 72969 0.68 0.71434
Target:  5'- gCACaagUCCCCCaugGCCCaguACGCGCGCu-- -3'
miRNA:   3'- gGUG---AGGGGGg--CGGG---UGCGUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 131232 0.68 0.71434
Target:  5'- cCCGgUCCCcgagaCCCugguGCCCaACGCGCAgGAGg -3'
miRNA:   3'- -GGUgAGGG-----GGG----CGGG-UGCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 158636 0.68 0.723831
Target:  5'- aCCugUCCCCCCcucccUCCAgGCGgcUACGGGg -3'
miRNA:   3'- -GGugAGGGGGGc----GGGUgCGU--GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 148624 0.68 0.723831
Target:  5'- aCC-CUCCCCCagGCgCuCGCACGCGc- -3'
miRNA:   3'- -GGuGAGGGGGg-CGgGuGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 37905 0.68 0.695173
Target:  5'- gCCGaggaCCCCGCCUACGCGCcCAGc -3'
miRNA:   3'- -GGUgaggGGGGCGGGUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 121293 0.68 0.695173
Target:  5'- gCCAcCUgUCCCCGCCCgagauagaggGCGUGCGCGc- -3'
miRNA:   3'- -GGU-GAgGGGGGCGGG----------UGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 170355 0.68 0.685514
Target:  5'- gCCGa-CCCCCCGUCCcCGU-CACGGGg -3'
miRNA:   3'- -GGUgaGGGGGGCGGGuGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 166196 0.68 0.695173
Target:  5'- cCCACcCCaCCCCGCgCCAC-CAcCACAGa -3'
miRNA:   3'- -GGUGaGG-GGGGCG-GGUGcGU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 120726 0.68 0.689383
Target:  5'- uUCACgCCCCCCGCCUcccuggugacccucaGgGCAUAgAGGa -3'
miRNA:   3'- -GGUGaGGGGGGCGGG---------------UgCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 17487 0.68 0.695173
Target:  5'- gCCACgCCCCCUccauuuucucagGCCCaaaugucgACGgGCGCGAGg -3'
miRNA:   3'- -GGUGaGGGGGG------------CGGG--------UGCgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 184194 0.68 0.695173
Target:  5'- gCCACgCCCCCUccauuuucucagGCCCaaaugucgACGgGCGCGAGg -3'
miRNA:   3'- -GGUGaGGGGGG------------CGGG--------UGCgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 16804 0.69 0.666082
Target:  5'- -gGCUgaCCCC-CUCAUGCACACAGGg -3'
miRNA:   3'- ggUGAggGGGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 183511 0.69 0.666082
Target:  5'- -gGCUgaCCCC-CUCAUGCACACAGGg -3'
miRNA:   3'- ggUGAggGGGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 67164 0.69 0.666082
Target:  5'- ---aUCUCCCCGCCCGCGU-C-CGAGa -3'
miRNA:   3'- ggugAGGGGGGCGGGUGCGuGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 145142 0.69 0.666082
Target:  5'- uUAUUCCCUCCGCCCccguaGCugACuGGg -3'
miRNA:   3'- gGUGAGGGGGGCGGGug---CGugUGuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.