Results 101 - 120 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 103524 | 0.69 | 0.621101 |
Target: 5'- gUCGCUCCccggguccguguagcCCCCGgCCACGUugGCGu- -3' miRNA: 3'- -GGUGAGG---------------GGGGCgGGUGCGugUGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 95716 | 0.69 | 0.646549 |
Target: 5'- cCCGCUUCCuCCCGCCCGgcguccccgcccCGCcCGgAGGa -3' miRNA: 3'- -GGUGAGGG-GGGCGGGU------------GCGuGUgUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 75661 | 0.69 | 0.646549 |
Target: 5'- uCCGCUCCCCCUccuccCCCAgcCGCgGCGgGAGg -3' miRNA: 3'- -GGUGAGGGGGGc----GGGU--GCG-UGUgUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 120802 | 0.69 | 0.636763 |
Target: 5'- gUugUCCuCCUCcCCCAUGCACAgAAGg -3' miRNA: 3'- gGugAGG-GGGGcGGGUGCGUGUgUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 127947 | 0.69 | 0.623058 |
Target: 5'- aCCACcCCCCCCGUCCuuCGCccaacccccucucCGCGAGc -3' miRNA: 3'- -GGUGaGGGGGGCGGGu-GCGu------------GUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 145142 | 0.69 | 0.666082 |
Target: 5'- uUAUUCCCUCCGCCCccguaGCugACuGGg -3' miRNA: 3'- gGUGAGGGGGGCGGGug---CGugUGuUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 112365 | 0.69 | 0.666082 |
Target: 5'- aCUuCUCCUCCUGCCCGUGCAC-CAu- -3' miRNA: 3'- -GGuGAGGGGGGCGGGUGCGUGuGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 183511 | 0.69 | 0.666082 |
Target: 5'- -gGCUgaCCCC-CUCAUGCACACAGGg -3' miRNA: 3'- ggUGAggGGGGcGGGUGCGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 16804 | 0.69 | 0.666082 |
Target: 5'- -gGCUgaCCCC-CUCAUGCACACAGGg -3' miRNA: 3'- ggUGAggGGGGcGGGUGCGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 82298 | 0.69 | 0.636763 |
Target: 5'- cCCGCUCgccccacccgCCCCCGUUCGCcCACuACGAGg -3' miRNA: 3'- -GGUGAG----------GGGGGCGGGUGcGUG-UGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 16941 | 0.69 | 0.630889 |
Target: 5'- -gGCUCCCuaccaauauggcugaCCC-CUCAUGCGCACAGGg -3' miRNA: 3'- ggUGAGGG---------------GGGcGGGUGCGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 109167 | 0.69 | 0.626974 |
Target: 5'- gCCug-CCCCCgGCCCGagugggacgagcCGUACGCGGGg -3' miRNA: 3'- -GGugaGGGGGgCGGGU------------GCGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 183647 | 0.69 | 0.621101 |
Target: 5'- -gGCUCCCuaccaauauggcugaCCCcCUCAUGCGCACAGGg -3' miRNA: 3'- ggUGAGGG---------------GGGcGGGUGCGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 140204 | 0.69 | 0.656324 |
Target: 5'- gCCGCUUCCCCCaGCCgUAUGCACc---- -3' miRNA: 3'- -GGUGAGGGGGG-CGG-GUGCGUGuguuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 67164 | 0.69 | 0.666082 |
Target: 5'- ---aUCUCCCCGCCCGCGU-C-CGAGa -3' miRNA: 3'- ggugAGGGGGGCGGGUGCGuGuGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 95527 | 0.7 | 0.607413 |
Target: 5'- cCCGCUCCa-UCGCCCGCGC-CGCc-- -3' miRNA: 3'- -GGUGAGGggGGCGGGUGCGuGUGuuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 55960 | 0.7 | 0.607413 |
Target: 5'- cCCAC-CCCCUCgggcacggGCCCGuagGCGCGCAGGg -3' miRNA: 3'- -GGUGaGGGGGG--------CGGGUg--CGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 117557 | 0.7 | 0.591811 |
Target: 5'- -uGCUCCCCCgggacggcagcaucaCGCCCAgGCACAa--- -3' miRNA: 3'- ggUGAGGGGG---------------GCGGGUgCGUGUguuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 147552 | 0.7 | 0.578214 |
Target: 5'- gCC-CUCCCgCCCGgCCACguccaGCAgGCAGGa -3' miRNA: 3'- -GGuGAGGG-GGGCgGGUG-----CGUgUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 117344 | 0.7 | 0.578214 |
Target: 5'- cCgGCUCgCCCCCGCCCccgGCGCcuccCGCGGc -3' miRNA: 3'- -GgUGAG-GGGGGCGGG---UGCGu---GUGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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