Results 121 - 140 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 105111 | 0.7 | 0.578214 |
Target: 5'- gCC-CUCCUCCCGCCCGCcgagcggccGCGCcCGGa -3' miRNA: 3'- -GGuGAGGGGGGCGGGUG---------CGUGuGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 147552 | 0.7 | 0.578214 |
Target: 5'- gCC-CUCCCgCCCGgCCACguccaGCAgGCAGGa -3' miRNA: 3'- -GGuGAGGG-GGGCgGGUG-----CGUgUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 117557 | 0.7 | 0.591811 |
Target: 5'- -uGCUCCCCCgggacggcagcaucaCGCCCAgGCACAa--- -3' miRNA: 3'- ggUGAGGGGG---------------GCGGGUgCGUGUguuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 55960 | 0.7 | 0.607413 |
Target: 5'- cCCAC-CCCCUCgggcacggGCCCGuagGCGCGCAGGg -3' miRNA: 3'- -GGUGaGGGGGG--------CGGGUg--CGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 51002 | 0.7 | 0.607413 |
Target: 5'- cCCGCUCCCagCC-CCCACGC-CGCu-- -3' miRNA: 3'- -GGUGAGGGg-GGcGGGUGCGuGUGuuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 129252 | 0.71 | 0.502285 |
Target: 5'- cCCACUCCCugguggCCCGCuCCGC-CGC-CAAGg -3' miRNA: 3'- -GGUGAGGG------GGGCG-GGUGcGUGuGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 68270 | 0.71 | 0.52091 |
Target: 5'- gUCGCUCCUCCC-CCgGCGCAC-CAGc -3' miRNA: 3'- -GGUGAGGGGGGcGGgUGCGUGuGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 118754 | 0.71 | 0.52091 |
Target: 5'- aCCGCcCCCCgCCGCCCcccuccucgguGCGCAgCACGuAGg -3' miRNA: 3'- -GGUGaGGGG-GGCGGG-----------UGCGU-GUGU-UC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 12113 | 0.71 | 0.530324 |
Target: 5'- cCCAC-CCCaaaCCC-CCCugGCACACAc- -3' miRNA: 3'- -GGUGaGGG---GGGcGGGugCGUGUGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 178820 | 0.71 | 0.530324 |
Target: 5'- cCCAC-CCCaaaCCC-CCCugGCACACAc- -3' miRNA: 3'- -GGUGaGGG---GGGcGGGugCGUGUGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 30479 | 0.71 | 0.530324 |
Target: 5'- cUCGC-CCaUCCCGCCCGCGgACGCGu- -3' miRNA: 3'- -GGUGaGG-GGGGCGGGUGCgUGUGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 81828 | 0.71 | 0.502285 |
Target: 5'- cCCGCUCCCCCCuGCUgcUGCAgCACGGa -3' miRNA: 3'- -GGUGAGGGGGG-CGGguGCGU-GUGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 19231 | 0.71 | 0.502285 |
Target: 5'- aCAUgcagCCCCUCGUUCAC-CACACAGGg -3' miRNA: 3'- gGUGa---GGGGGGCGGGUGcGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 161505 | 0.71 | 0.502285 |
Target: 5'- aCCGC-CCUCCCGCCCGC-CACGu--- -3' miRNA: 3'- -GGUGaGGGGGGCGGGUGcGUGUguuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 123454 | 0.71 | 0.511563 |
Target: 5'- cCCGCg-CCCCUGCCCA-GCACcuACGGGg -3' miRNA: 3'- -GGUGagGGGGGCGGGUgCGUG--UGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 128104 | 0.71 | 0.52091 |
Target: 5'- aCCACcaaaCCCCaucguCGCCCACGCGCcCAAc -3' miRNA: 3'- -GGUGa---GGGGg----GCGGGUGCGUGuGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 103704 | 0.71 | 0.52091 |
Target: 5'- -gGC-CUCCCCGuCCCAC-CACACGAGc -3' miRNA: 3'- ggUGaGGGGGGC-GGGUGcGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 117473 | 0.71 | 0.549331 |
Target: 5'- cCCACUCCCCCaagauagGCUCcugcgGCGC-CGCGAGc -3' miRNA: 3'- -GGUGAGGGGGg------CGGG-----UGCGuGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 164680 | 0.71 | 0.549331 |
Target: 5'- gCGCUcaacCCCCCCGaCUCGCGCcgcuGCACAGa -3' miRNA: 3'- gGUGA----GGGGGGC-GGGUGCG----UGUGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 67112 | 0.72 | 0.483957 |
Target: 5'- -aGCUgCCCCCGcCCCugGC-CGCGAa -3' miRNA: 3'- ggUGAgGGGGGC-GGGugCGuGUGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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