miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 120802 0.69 0.636763
Target:  5'- gUugUCCuCCUCcCCCAUGCACAgAAGg -3'
miRNA:   3'- gGugAGG-GGGGcGGGUGCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 50718 0.69 0.626974
Target:  5'- cUCGCUCucgccuuugCCCUCGCCCGCGCuuuCGCu-- -3'
miRNA:   3'- -GGUGAG---------GGGGGCGGGUGCGu--GUGuuc -5'
4040 3' -59.8 NC_001650.1 + 75661 0.69 0.646549
Target:  5'- uCCGCUCCCCCUccuccCCCAgcCGCgGCGgGAGg -3'
miRNA:   3'- -GGUGAGGGGGGc----GGGU--GCG-UGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 145142 0.69 0.666082
Target:  5'- uUAUUCCCUCCGCCCccguaGCugACuGGg -3'
miRNA:   3'- gGUGAGGGGGGCGGGug---CGugUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 112365 0.69 0.666082
Target:  5'- aCUuCUCCUCCUGCCCGUGCAC-CAu- -3'
miRNA:   3'- -GGuGAGGGGGGCGGGUGCGUGuGUuc -5'
4040 3' -59.8 NC_001650.1 + 126268 0.69 0.656324
Target:  5'- gCCGCgCCUCCCGCCCA-GCugAgGGu -3'
miRNA:   3'- -GGUGaGGGGGGCGGGUgCGugUgUUc -5'
4040 3' -59.8 NC_001650.1 + 112237 0.69 0.666082
Target:  5'- -gACggCCgCCCCGCCCAggUGCugGCAGa -3'
miRNA:   3'- ggUGa-GG-GGGGCGGGU--GCGugUGUUc -5'
4040 3' -59.8 NC_001650.1 + 54229 0.69 0.665107
Target:  5'- cCCGCgCCgCCCUcagcagccucaggGCCCGCGC-CACGGGc -3'
miRNA:   3'- -GGUGaGG-GGGG-------------CGGGUGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 127947 0.69 0.623058
Target:  5'- aCCACcCCCCCCGUCCuuCGCccaacccccucucCGCGAGc -3'
miRNA:   3'- -GGUGaGGGGGGCGGGu-GCGu------------GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 103524 0.69 0.621101
Target:  5'- gUCGCUCCccggguccguguagcCCCCGgCCACGUugGCGu- -3'
miRNA:   3'- -GGUGAGG---------------GGGGCgGGUGCGugUGUuc -5'
4040 3' -59.8 NC_001650.1 + 2414 0.68 0.699024
Target:  5'- cCCACUCCCUaaaucugcccggcaaCCGCCUACcuCACACc-- -3'
miRNA:   3'- -GGUGAGGGG---------------GGCGGGUGc-GUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 3648 0.68 0.685514
Target:  5'- gCCGa-CCCCCCGUCCcCGU-CACGGGg -3'
miRNA:   3'- -GGUgaGGGGGGCGGGuGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 142108 0.68 0.704785
Target:  5'- aCACUCa-CCCGCCCuCGCGCGg--- -3'
miRNA:   3'- gGUGAGggGGGCGGGuGCGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 72969 0.68 0.71434
Target:  5'- gCACaagUCCCCCaugGCCCaguACGCGCGCu-- -3'
miRNA:   3'- gGUG---AGGGGGg--CGGG---UGCGUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 131232 0.68 0.71434
Target:  5'- cCCGgUCCCcgagaCCCugguGCCCaACGCGCAgGAGg -3'
miRNA:   3'- -GGUgAGGG-----GGG----CGGG-UGCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 158636 0.68 0.723831
Target:  5'- aCCugUCCCCCCcucccUCCAgGCGgcUACGGGg -3'
miRNA:   3'- -GGugAGGGGGGc----GGGUgCGU--GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 148624 0.68 0.723831
Target:  5'- aCC-CUCCCCCagGCgCuCGCACGCGc- -3'
miRNA:   3'- -GGuGAGGGGGg-CGgGuGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 170355 0.68 0.685514
Target:  5'- gCCGa-CCCCCCGUCCcCGU-CACGGGg -3'
miRNA:   3'- -GGUgaGGGGGGCGGGuGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 95501 0.68 0.685514
Target:  5'- -gGCUCCCCCUcCCCGgCGCcCGCAc- -3'
miRNA:   3'- ggUGAGGGGGGcGGGU-GCGuGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 169121 0.68 0.699024
Target:  5'- cCCACUCCCUaaaucugcccggcaaCCGCCUACcuCACACc-- -3'
miRNA:   3'- -GGUGAGGGG---------------GGCGGGUGc-GUGUGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.