miRNA display CGI


Results 81 - 100 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 142108 0.68 0.704785
Target:  5'- aCACUCa-CCCGCCCuCGCGCGg--- -3'
miRNA:   3'- gGUGAGggGGGCGGGuGCGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 169121 0.68 0.699024
Target:  5'- cCCACUCCCUaaaucugcccggcaaCCGCCUACcuCACACc-- -3'
miRNA:   3'- -GGUGAGGGG---------------GGCGGGUGc-GUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 120726 0.68 0.689383
Target:  5'- uUCACgCCCCCCGCCUcccuggugacccucaGgGCAUAgAGGa -3'
miRNA:   3'- -GGUGaGGGGGGCGGG---------------UgCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 70404 0.68 0.685514
Target:  5'- gCACUCCUCCCaggagacgGCCCugGaCGuCACAGa -3'
miRNA:   3'- gGUGAGGGGGG--------CGGGugC-GU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 3648 0.68 0.685514
Target:  5'- gCCGa-CCCCCCGUCCcCGU-CACGGGg -3'
miRNA:   3'- -GGUgaGGGGGGCGGGuGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 41040 0.68 0.699024
Target:  5'- ----aCCCCCCGCagcagagggucucgCACGUACACGAGc -3'
miRNA:   3'- ggugaGGGGGGCGg-------------GUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 133936 0.68 0.695173
Target:  5'- gCCGuCUCCCCcgccgCCGCCCGCucccGgGCGCAGa -3'
miRNA:   3'- -GGU-GAGGGG-----GGCGGGUG----CgUGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 133053 0.68 0.695173
Target:  5'- aCCACgcgcgCCgCCUGCCC-CGCGgGCAc- -3'
miRNA:   3'- -GGUGa----GGgGGGCGGGuGCGUgUGUuc -5'
4040 3' -59.8 NC_001650.1 + 75112 0.68 0.695173
Target:  5'- uCCAcCUCCCCCaggaCGCCCaggACGCucaGCACGu- -3'
miRNA:   3'- -GGU-GAGGGGG----GCGGG---UGCG---UGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 62423 0.68 0.69421
Target:  5'- gCCGCUCCCCCCuucCCCGuuaccccCGC-CGCcGGg -3'
miRNA:   3'- -GGUGAGGGGGGc--GGGU-------GCGuGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 161590 0.68 0.685514
Target:  5'- aCGCgCCCCCCGCgCGCuggggGCGCugAAa -3'
miRNA:   3'- gGUGaGGGGGGCGgGUG-----CGUGugUUc -5'
4040 3' -59.8 NC_001650.1 + 49385 0.68 0.71434
Target:  5'- uCCAguaugaUCCCCCUGCCCcCGgAgACGGGu -3'
miRNA:   3'- -GGUg-----AGGGGGGCGGGuGCgUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 95501 0.68 0.685514
Target:  5'- -gGCUCCCCCUcCCCGgCGCcCGCAc- -3'
miRNA:   3'- ggUGAGGGGGGcGGGU-GCGuGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 17487 0.68 0.695173
Target:  5'- gCCACgCCCCCUccauuuucucagGCCCaaaugucgACGgGCGCGAGg -3'
miRNA:   3'- -GGUGaGGGGGG------------CGGG--------UGCgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 125580 0.68 0.685514
Target:  5'- aCCACcugCCCCCCaacCCCACccuggagaugcuGCACACGu- -3'
miRNA:   3'- -GGUGa--GGGGGGc--GGGUG------------CGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 105315 0.68 0.685514
Target:  5'- aCCAagcgCCUCCCGUCCccgcuGCGCACcuuCAGGg -3'
miRNA:   3'- -GGUga--GGGGGGCGGG-----UGCGUGu--GUUC- -5'
4040 3' -59.8 NC_001650.1 + 170355 0.68 0.685514
Target:  5'- gCCGa-CCCCCCGUCCcCGU-CACGGGg -3'
miRNA:   3'- -GGUgaGGGGGGCGGGuGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 184194 0.68 0.695173
Target:  5'- gCCACgCCCCCUccauuuucucagGCCCaaaugucgACGgGCGCGAGg -3'
miRNA:   3'- -GGUGaGGGGGG------------CGGG--------UGCgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 145173 0.67 0.778978
Target:  5'- cCUGCaaCCCCCGUCCcCGCGCAguaAAGa -3'
miRNA:   3'- -GGUGagGGGGGCGGGuGCGUGUg--UUC- -5'
4040 3' -59.8 NC_001650.1 + 113539 0.67 0.778978
Target:  5'- gUAC-CCCauCCCGCCCACGCAgAa--- -3'
miRNA:   3'- gGUGaGGG--GGGCGGGUGCGUgUguuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.