miRNA display CGI


Results 101 - 120 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 73658 0.67 0.770041
Target:  5'- aCCACUCCCUCUcugacccgGCCUACGaguuCAGGg -3'
miRNA:   3'- -GGUGAGGGGGG--------CGGGUGCguguGUUC- -5'
4040 3' -59.8 NC_001650.1 + 70532 0.67 0.770041
Target:  5'- -aGCUCaggagcgCCCCGCCCAUGUuuaucUACAAGa -3'
miRNA:   3'- ggUGAGg------GGGGCGGGUGCGu----GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 24535 0.67 0.770041
Target:  5'- gCCcCUaCCCCCUGgCCGCGCuggACGCGc- -3'
miRNA:   3'- -GGuGA-GGGGGGCgGGUGCG---UGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 119903 0.67 0.760992
Target:  5'- gCACUCggggCCgUCGCCCACGCugaaggcgaACACGAa -3'
miRNA:   3'- gGUGAG----GGgGGCGGGUGCG---------UGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 145845 0.67 0.755512
Target:  5'- uCCACgcccugCCCCCgGUaaucugucuuggaguCCACGUACGCGGc -3'
miRNA:   3'- -GGUGa-----GGGGGgCG---------------GGUGCGUGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 155554 0.67 0.751838
Target:  5'- aCGgUCUCCCUGgCCGCGCGCuCGGc -3'
miRNA:   3'- gGUgAGGGGGGCgGGUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 135634 0.67 0.751838
Target:  5'- cCCGCgccgUCCCCaCCGCgguacCCACGgUGCACGGGc -3'
miRNA:   3'- -GGUG----AGGGG-GGCG-----GGUGC-GUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 76955 0.67 0.751838
Target:  5'- aCCACcgCCCCCaUGCCCGUGC-C-CGAGg -3'
miRNA:   3'- -GGUGa-GGGGG-GCGGGUGCGuGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 113539 0.67 0.778978
Target:  5'- gUAC-CCCauCCCGCCCACGCAgAa--- -3'
miRNA:   3'- gGUGaGGG--GGGCGGGUGCGUgUguuc -5'
4040 3' -59.8 NC_001650.1 + 92957 0.67 0.733249
Target:  5'- aCCG-UCCCCCCGCCCGagaugaGCugGu--- -3'
miRNA:   3'- -GGUgAGGGGGGCGGGUg-----CGugUguuc -5'
4040 3' -59.8 NC_001650.1 + 155178 0.67 0.733249
Target:  5'- gCCAC-CCCCCgCGCCCcgaggGCGUGCGgGu- -3'
miRNA:   3'- -GGUGaGGGGG-GCGGG-----UGCGUGUgUuc -5'
4040 3' -59.8 NC_001650.1 + 112586 0.67 0.742588
Target:  5'- gCCACaCCCCUggCGCCCGgCGCGCcCAc- -3'
miRNA:   3'- -GGUGaGGGGG--GCGGGU-GCGUGuGUuc -5'
4040 3' -59.8 NC_001650.1 + 63149 0.67 0.750917
Target:  5'- -gGCgCCCCCCGCgCCGCGgcgucccCGgGCAGGg -3'
miRNA:   3'- ggUGaGGGGGGCG-GGUGC-------GUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 58033 0.67 0.751838
Target:  5'- gCCGCgguUCCUCCCuuuuuuUCCACGCACcCGAGa -3'
miRNA:   3'- -GGUG---AGGGGGGc-----GGGUGCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 38129 0.67 0.742588
Target:  5'- gCCAgUUCCCCCUGCUgAC-CAC-CAAGa -3'
miRNA:   3'- -GGU-GAGGGGGGCGGgUGcGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 45965 0.67 0.750917
Target:  5'- gCCAgUUCCCCUcucaGCCgCGCGCcgauuggccgagaGCGCAGGg -3'
miRNA:   3'- -GGUgAGGGGGG----CGG-GUGCG-------------UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 157299 0.67 0.742588
Target:  5'- gCAC-CUCCCCGCCCcCGCccucGCcCAGGu -3'
miRNA:   3'- gGUGaGGGGGGCGGGuGCG----UGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 136064 0.67 0.778978
Target:  5'- gUACUCCCCCaGCCC-CGCGgcCGCc-- -3'
miRNA:   3'- gGUGAGGGGGgCGGGuGCGU--GUGuuc -5'
4040 3' -59.8 NC_001650.1 + 177535 0.67 0.751838
Target:  5'- cCCAC-CCUCCaaaGCCCACcCAacaACAAGa -3'
miRNA:   3'- -GGUGaGGGGGg--CGGGUGcGUg--UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 131512 0.67 0.742588
Target:  5'- gCCAUgaccCUCUUCGCCCACGCGguCAAc -3'
miRNA:   3'- -GGUGa---GGGGGGCGGGUGCGUguGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.