miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 435 1.09 0.001797
Target:  5'- gCCACUCCCCCCGCCCACGCACACAAGc -3'
miRNA:   3'- -GGUGAGGGGGGCGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 167142 1.09 0.001797
Target:  5'- gCCACUCCCCCCGCCCACGCACACAAGc -3'
miRNA:   3'- -GGUGAGGGGGGCGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 114988 0.85 0.079661
Target:  5'- uCUACUCgCCCCCggccuccagcGCCCGCGCGCACGAGu -3'
miRNA:   3'- -GGUGAG-GGGGG----------CGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 155809 0.8 0.152797
Target:  5'- aCCugUagagggucagCUCCCCGCCCGCGCACGCGu- -3'
miRNA:   3'- -GGugA----------GGGGGGCGGGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 58508 0.78 0.224171
Target:  5'- gCCcCUCCUCUgGCCCAUGgCACACAGGg -3'
miRNA:   3'- -GGuGAGGGGGgCGGGUGC-GUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 136442 0.77 0.234861
Target:  5'- gCAgUCCuCCUCGCCCACGCgcaggcccucGCACAGGg -3'
miRNA:   3'- gGUgAGG-GGGGCGGGUGCG----------UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 129124 0.77 0.257523
Target:  5'- aCACUCCCCCgCGCCCGgggccgaGgACACGGGg -3'
miRNA:   3'- gGUGAGGGGG-GCGGGUg------CgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 126473 0.77 0.257523
Target:  5'- gCUACUCCCCCguCGCCCACcC-CGCGAGg -3'
miRNA:   3'- -GGUGAGGGGG--GCGGGUGcGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 111491 0.77 0.261668
Target:  5'- gCCACccccgggcuggugaUCCCCgCCG-CCGCGCGCACGGGg -3'
miRNA:   3'- -GGUG--------------AGGGG-GGCgGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 69095 0.76 0.26951
Target:  5'- cUCAcCUCCugguCCCCGCCCGCGCACgACAu- -3'
miRNA:   3'- -GGU-GAGG----GGGGCGGGUGCGUG-UGUuc -5'
4040 3' -59.8 NC_001650.1 + 133227 0.76 0.287684
Target:  5'- cCCGCgcccccgUCCCCCCGCagcuCGCACACGGGc -3'
miRNA:   3'- -GGUG-------AGGGGGGCGggu-GCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 117814 0.75 0.321255
Target:  5'- aCC-CUCCCCCuCGCCCcucgcccucaggcACGCGgGCAGGc -3'
miRNA:   3'- -GGuGAGGGGG-GCGGG-------------UGCGUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 51405 0.75 0.321955
Target:  5'- cCCGCgcaUCCCCauggugaaccugCUGCCCGCGCGCuACAGGg -3'
miRNA:   3'- -GGUG---AGGGG------------GGCGGGUGCGUG-UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 157272 0.75 0.336204
Target:  5'- gCACUCCCCCaCGCgCACGCuCugGAu -3'
miRNA:   3'- gGUGAGGGGG-GCGgGUGCGuGugUUc -5'
4040 3' -59.8 NC_001650.1 + 75722 0.74 0.353903
Target:  5'- aCCcCUCCaCCCCGuccagguagagggacCCCACGCGCACGu- -3'
miRNA:   3'- -GGuGAGG-GGGGC---------------GGGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 153542 0.74 0.366062
Target:  5'- cCCGCUCgCCCCG-CgGCGCGCGCGu- -3'
miRNA:   3'- -GGUGAGgGGGGCgGgUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 160476 0.74 0.373807
Target:  5'- uCCGC-CCCCCgCGCgCCGCGaggaCGCGCAGGa -3'
miRNA:   3'- -GGUGaGGGGG-GCG-GGUGC----GUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 145699 0.74 0.381662
Target:  5'- -aGCUCCCCgCCGCCacguagaaCugGCACAgGAGg -3'
miRNA:   3'- ggUGAGGGG-GGCGG--------GugCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 122912 0.74 0.389626
Target:  5'- aCCugUCCCagcuCCagauaGCCCACGCcCACGGGg -3'
miRNA:   3'- -GGugAGGG----GGg----CGGGUGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 156161 0.73 0.422548
Target:  5'- cCCACgUCCuCCCCGCCCuCGCAgAUg-- -3'
miRNA:   3'- -GGUG-AGG-GGGGCGGGuGCGUgUGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.