miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 148954 0.73 0.431037
Target:  5'- cCCGC-CCCgCCCaCCCGCGCucCACAGGc -3'
miRNA:   3'- -GGUGaGGG-GGGcGGGUGCGu-GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 180712 0.73 0.431037
Target:  5'- cCCACcugCCCgCCCGCCCGCccaccugacccGCGCAgAGGu -3'
miRNA:   3'- -GGUGa--GGG-GGGCGGGUG-----------CGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 14005 0.73 0.431037
Target:  5'- cCCACcugCCCgCCCGCCCGCccaccugacccGCGCAgAGGu -3'
miRNA:   3'- -GGUGa--GGG-GGGCGGGUG-----------CGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 57398 0.72 0.448308
Target:  5'- gCgGCUCCCCCacccccugcgGCCCGgGCGCGCAc- -3'
miRNA:   3'- -GgUGAGGGGGg---------CGGGUgCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 148410 0.72 0.457086
Target:  5'- gCCGCgCCCCCCuggcgcgggacgGCCgC-CGCGCACGAGu -3'
miRNA:   3'- -GGUGaGGGGGG------------CGG-GuGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 154974 0.72 0.474914
Target:  5'- uCCAC-CCCCCUGCCUAUgaaGUACcCGAGg -3'
miRNA:   3'- -GGUGaGGGGGGCGGGUG---CGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 67112 0.72 0.483957
Target:  5'- -aGCUgCCCCCGcCCCugGC-CGCGAa -3'
miRNA:   3'- ggUGAgGGGGGC-GGGugCGuGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 19231 0.71 0.502285
Target:  5'- aCAUgcagCCCCUCGUUCAC-CACACAGGg -3'
miRNA:   3'- gGUGa---GGGGGGCGGGUGcGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 161505 0.71 0.502285
Target:  5'- aCCGC-CCUCCCGCCCGC-CACGu--- -3'
miRNA:   3'- -GGUGaGGGGGGCGGGUGcGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 81828 0.71 0.502285
Target:  5'- cCCGCUCCCCCCuGCUgcUGCAgCACGGa -3'
miRNA:   3'- -GGUGAGGGGGG-CGGguGCGU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 129252 0.71 0.502285
Target:  5'- cCCACUCCCugguggCCCGCuCCGC-CGC-CAAGg -3'
miRNA:   3'- -GGUGAGGG------GGGCG-GGUGcGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 123454 0.71 0.511563
Target:  5'- cCCGCg-CCCCUGCCCA-GCACcuACGGGg -3'
miRNA:   3'- -GGUGagGGGGGCGGGUgCGUG--UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 68270 0.71 0.52091
Target:  5'- gUCGCUCCUCCC-CCgGCGCAC-CAGc -3'
miRNA:   3'- -GGUGAGGGGGGcGGgUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 103704 0.71 0.52091
Target:  5'- -gGC-CUCCCCGuCCCAC-CACACGAGc -3'
miRNA:   3'- ggUGaGGGGGGC-GGGUGcGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 128104 0.71 0.52091
Target:  5'- aCCACcaaaCCCCaucguCGCCCACGCGCcCAAc -3'
miRNA:   3'- -GGUGa---GGGGg----GCGGGUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 118754 0.71 0.52091
Target:  5'- aCCGCcCCCCgCCGCCCcccuccucgguGCGCAgCACGuAGg -3'
miRNA:   3'- -GGUGaGGGG-GGCGGG-----------UGCGU-GUGU-UC- -5'
4040 3' -59.8 NC_001650.1 + 12113 0.71 0.530324
Target:  5'- cCCAC-CCCaaaCCC-CCCugGCACACAc- -3'
miRNA:   3'- -GGUGaGGG---GGGcGGGugCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 30479 0.71 0.530324
Target:  5'- cUCGC-CCaUCCCGCCCGCGgACGCGu- -3'
miRNA:   3'- -GGUGaGG-GGGGCGGGUGCgUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 178820 0.71 0.530324
Target:  5'- cCCAC-CCCaaaCCC-CCCugGCACACAc- -3'
miRNA:   3'- -GGUGaGGG---GGGcGGGugCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 164680 0.71 0.549331
Target:  5'- gCGCUcaacCCCCCCGaCUCGCGCcgcuGCACAGa -3'
miRNA:   3'- gGUGA----GGGGGGC-GGGUGCG----UGUGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.