miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 117473 0.71 0.549331
Target:  5'- cCCACUCCCCCaagauagGCUCcugcgGCGC-CGCGAGc -3'
miRNA:   3'- -GGUGAGGGGGg------CGGG-----UGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 57750 0.7 0.558914
Target:  5'- uCgACggaCCCCCGuccCCCACGCGCGCGc- -3'
miRNA:   3'- -GgUGag-GGGGGC---GGGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 136134 0.7 0.568543
Target:  5'- aCCGC-CCUgcaCCUGUCCACGCACAUg-- -3'
miRNA:   3'- -GGUGaGGG---GGGCGGGUGCGUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 68362 0.7 0.568543
Target:  5'- gCACUCagCCaCCGCCCAacugcccucuggUGUACACAGGa -3'
miRNA:   3'- gGUGAGg-GG-GGCGGGU------------GCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 117344 0.7 0.578214
Target:  5'- cCgGCUCgCCCCCGCCCccgGCGCcuccCGCGGc -3'
miRNA:   3'- -GgUGAG-GGGGGCGGG---UGCGu---GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 105111 0.7 0.578214
Target:  5'- gCC-CUCCUCCCGCCCGCcgagcggccGCGCcCGGa -3'
miRNA:   3'- -GGuGAGGGGGGCGGGUG---------CGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 147552 0.7 0.578214
Target:  5'- gCC-CUCCCgCCCGgCCACguccaGCAgGCAGGa -3'
miRNA:   3'- -GGuGAGGG-GGGCgGGUG-----CGUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 117557 0.7 0.591811
Target:  5'- -uGCUCCCCCgggacggcagcaucaCGCCCAgGCACAa--- -3'
miRNA:   3'- ggUGAGGGGG---------------GCGGGUgCGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 51002 0.7 0.607413
Target:  5'- cCCGCUCCCagCC-CCCACGC-CGCu-- -3'
miRNA:   3'- -GGUGAGGGg-GGcGGGUGCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 95527 0.7 0.607413
Target:  5'- cCCGCUCCa-UCGCCCGCGC-CGCc-- -3'
miRNA:   3'- -GGUGAGGggGGCGGGUGCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 55960 0.7 0.607413
Target:  5'- cCCAC-CCCCUCgggcacggGCCCGuagGCGCGCAGGg -3'
miRNA:   3'- -GGUGaGGGGGG--------CGGGUg--CGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 103524 0.69 0.621101
Target:  5'- gUCGCUCCccggguccguguagcCCCCGgCCACGUugGCGu- -3'
miRNA:   3'- -GGUGAGG---------------GGGGCgGGUGCGugUGUuc -5'
4040 3' -59.8 NC_001650.1 + 183647 0.69 0.621101
Target:  5'- -gGCUCCCuaccaauauggcugaCCCcCUCAUGCGCACAGGg -3'
miRNA:   3'- ggUGAGGG---------------GGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 127947 0.69 0.623058
Target:  5'- aCCACcCCCCCCGUCCuuCGCccaacccccucucCGCGAGc -3'
miRNA:   3'- -GGUGaGGGGGGCGGGu-GCGu------------GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 109167 0.69 0.626974
Target:  5'- gCCug-CCCCCgGCCCGagugggacgagcCGUACGCGGGg -3'
miRNA:   3'- -GGugaGGGGGgCGGGU------------GCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 50718 0.69 0.626974
Target:  5'- cUCGCUCucgccuuugCCCUCGCCCGCGCuuuCGCu-- -3'
miRNA:   3'- -GGUGAG---------GGGGGCGGGUGCGu--GUGuuc -5'
4040 3' -59.8 NC_001650.1 + 16941 0.69 0.630889
Target:  5'- -gGCUCCCuaccaauauggcugaCCC-CUCAUGCGCACAGGg -3'
miRNA:   3'- ggUGAGGG---------------GGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 120802 0.69 0.636763
Target:  5'- gUugUCCuCCUCcCCCAUGCACAgAAGg -3'
miRNA:   3'- gGugAGG-GGGGcGGGUGCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 82298 0.69 0.636763
Target:  5'- cCCGCUCgccccacccgCCCCCGUUCGCcCACuACGAGg -3'
miRNA:   3'- -GGUGAG----------GGGGGCGGGUGcGUG-UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 75661 0.69 0.646549
Target:  5'- uCCGCUCCCCCUccuccCCCAgcCGCgGCGgGAGg -3'
miRNA:   3'- -GGUGAGGGGGGc----GGGU--GCG-UGUgUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.