Results 101 - 120 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 157299 | 0.67 | 0.742588 |
Target: 5'- gCAC-CUCCCCGCCCcCGCccucGCcCAGGu -3' miRNA: 3'- gGUGaGGGGGGCGGGuGCG----UGuGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 112586 | 0.67 | 0.742588 |
Target: 5'- gCCACaCCCCUggCGCCCGgCGCGCcCAc- -3' miRNA: 3'- -GGUGaGGGGG--GCGGGU-GCGUGuGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 131512 | 0.67 | 0.742588 |
Target: 5'- gCCAUgaccCUCUUCGCCCACGCGguCAAc -3' miRNA: 3'- -GGUGa---GGGGGGCGGGUGCGUguGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 38129 | 0.67 | 0.742588 |
Target: 5'- gCCAgUUCCCCCUGCUgAC-CAC-CAAGa -3' miRNA: 3'- -GGU-GAGGGGGGCGGgUGcGUGuGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 45965 | 0.67 | 0.750917 |
Target: 5'- gCCAgUUCCCCUcucaGCCgCGCGCcgauuggccgagaGCGCAGGg -3' miRNA: 3'- -GGUgAGGGGGG----CGG-GUGCG-------------UGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 63149 | 0.67 | 0.750917 |
Target: 5'- -gGCgCCCCCCGCgCCGCGgcgucccCGgGCAGGg -3' miRNA: 3'- ggUGaGGGGGGCG-GGUGC-------GUgUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 5893 | 0.67 | 0.751838 |
Target: 5'- -gGgUCCCaCCCGCUUGCGCAguUAAGa -3' miRNA: 3'- ggUgAGGG-GGGCGGGUGCGUguGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 10828 | 0.67 | 0.751838 |
Target: 5'- cCCAC-CCUCCaaaGCCCACcCAacaACAAGa -3' miRNA: 3'- -GGUGaGGGGGg--CGGGUGcGUg--UGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 177535 | 0.67 | 0.751838 |
Target: 5'- cCCAC-CCUCCaaaGCCCACcCAacaACAAGa -3' miRNA: 3'- -GGUGaGGGGGg--CGGGUGcGUg--UGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 76955 | 0.67 | 0.751838 |
Target: 5'- aCCACcgCCCCCaUGCCCGUGC-C-CGAGg -3' miRNA: 3'- -GGUGa-GGGGG-GCGGGUGCGuGuGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 135634 | 0.67 | 0.751838 |
Target: 5'- cCCGCgccgUCCCCaCCGCgguacCCACGgUGCACGGGc -3' miRNA: 3'- -GGUG----AGGGG-GGCG-----GGUGC-GUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 155554 | 0.67 | 0.751838 |
Target: 5'- aCGgUCUCCCUGgCCGCGCGCuCGGc -3' miRNA: 3'- gGUgAGGGGGGCgGGUGCGUGuGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 60911 | 0.67 | 0.751838 |
Target: 5'- cCCcCUCCCCaCuCGCgUGCGCGCGCu-- -3' miRNA: 3'- -GGuGAGGGG-G-GCGgGUGCGUGUGuuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 172600 | 0.67 | 0.751838 |
Target: 5'- -gGgUCCCaCCCGCUUGCGCAguUAAGa -3' miRNA: 3'- ggUgAGGG-GGGCGGGUGCGUguGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 58033 | 0.67 | 0.751838 |
Target: 5'- gCCGCgguUCCUCCCuuuuuuUCCACGCACcCGAGa -3' miRNA: 3'- -GGUG---AGGGGGGc-----GGGUGCGUGuGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 145845 | 0.67 | 0.755512 |
Target: 5'- uCCACgcccugCCCCCgGUaaucugucuuggaguCCACGUACGCGGc -3' miRNA: 3'- -GGUGa-----GGGGGgCG---------------GGUGCGUGUGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 119903 | 0.67 | 0.760992 |
Target: 5'- gCACUCggggCCgUCGCCCACGCugaaggcgaACACGAa -3' miRNA: 3'- gGUGAG----GGgGGCGGGUGCG---------UGUGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 134448 | 0.67 | 0.760992 |
Target: 5'- -uGCUCCCCCCuaUgAgGCACACcGGc -3' miRNA: 3'- ggUGAGGGGGGcgGgUgCGUGUGuUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 70532 | 0.67 | 0.770041 |
Target: 5'- -aGCUCaggagcgCCCCGCCCAUGUuuaucUACAAGa -3' miRNA: 3'- ggUGAGg------GGGGCGGGUGCGu----GUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 73658 | 0.67 | 0.770041 |
Target: 5'- aCCACUCCCUCUcugacccgGCCUACGaguuCAGGg -3' miRNA: 3'- -GGUGAGGGGGG--------CGGGUGCguguGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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