miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 52547 0.66 0.813445
Target:  5'- gCAC-CUCCaCCGCCCcccucagggaggGgGCGCGCAGGc -3'
miRNA:   3'- gGUGaGGGG-GGCGGG------------UgCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 158669 0.66 0.812611
Target:  5'- aCACUUUCCCCuuccucgGCCCACaCACAaAAGg -3'
miRNA:   3'- gGUGAGGGGGG-------CGGGUGcGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 71376 0.66 0.805036
Target:  5'- cCCAa-CCCCUgCGCCgGCGCGCucCAGGc -3'
miRNA:   3'- -GGUgaGGGGG-GCGGgUGCGUGu-GUUC- -5'
4040 3' -59.8 NC_001650.1 + 161857 0.66 0.805036
Target:  5'- gUC-CUCCCCgCUGCCCAC-CACcccCAGGu -3'
miRNA:   3'- -GGuGAGGGG-GGCGGGUGcGUGu--GUUC- -5'
4040 3' -59.8 NC_001650.1 + 117710 0.66 0.805036
Target:  5'- -gACggCCgCCCGCaCCGcCGCGCGCAGc -3'
miRNA:   3'- ggUGa-GGgGGGCG-GGU-GCGUGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 27082 0.66 0.805036
Target:  5'- cCCACUacaCCagCCUgGCCCAgGCGCuCAGGg -3'
miRNA:   3'- -GGUGA---GG--GGGgCGGGUgCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 30948 0.66 0.799921
Target:  5'- cCCGCgcgacgUCCUCCuCCCACauggccaagcuguuuGCGCACGAGg -3'
miRNA:   3'- -GGUGa-----GGGGGGcGGGUG---------------CGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 93231 0.66 0.796483
Target:  5'- gCCACggCCgaaaCgCGCCCGCGCGCgACAu- -3'
miRNA:   3'- -GGUGa-GGg---GgGCGGGUGCGUG-UGUuc -5'
4040 3' -59.8 NC_001650.1 + 48915 0.66 0.796483
Target:  5'- gUCACUCCCgCCGCCCugACGguggucaACACcucuGAGg -3'
miRNA:   3'- -GGUGAGGGgGGCGGG--UGCg------UGUG----UUC- -5'
4040 3' -59.8 NC_001650.1 + 57461 0.66 0.796483
Target:  5'- cCCAUUCCCCCgGgCCCcuCGC-CGCu-- -3'
miRNA:   3'- -GGUGAGGGGGgC-GGGu-GCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 94737 0.66 0.796483
Target:  5'- cCCACgcgaaCCCCGCCUcgGCGgcccaGCGCAGGa -3'
miRNA:   3'- -GGUGagg--GGGGCGGG--UGCg----UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 72273 0.66 0.796483
Target:  5'- cCCGCgUCCuggaugcgCCCCGCgC-CGCACACcAGa -3'
miRNA:   3'- -GGUG-AGG--------GGGGCGgGuGCGUGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 103315 0.66 0.796483
Target:  5'- uCCACUCgguCCCCCGUCUcCGUgACGCcAGa -3'
miRNA:   3'- -GGUGAG---GGGGGCGGGuGCG-UGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 130585 0.66 0.787795
Target:  5'- -aGCUCCCUCgGCCaAUGagaGCGCAGGg -3'
miRNA:   3'- ggUGAGGGGGgCGGgUGCg--UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 148204 0.66 0.787795
Target:  5'- gCGCcUCCCCCGaCCC-CGCcuuccagaucACGCAGGa -3'
miRNA:   3'- gGUGaGGGGGGC-GGGuGCG----------UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 95810 0.66 0.787795
Target:  5'- gUACUCCCCCUcCCCGcCGC-CACc-- -3'
miRNA:   3'- gGUGAGGGGGGcGGGU-GCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 54184 0.66 0.787795
Target:  5'- cCCGCUCCCCCuCGUcgaUCugGCcCuuGAGg -3'
miRNA:   3'- -GGUGAGGGGG-GCG---GGugCGuGugUUC- -5'
4040 3' -59.8 NC_001650.1 + 119083 0.66 0.787795
Target:  5'- uCCucCUCCCuCUCGgCCAUGUAgACGGGg -3'
miRNA:   3'- -GGu-GAGGG-GGGCgGGUGCGUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 78839 0.66 0.787795
Target:  5'- -aGCcCCCCCUGCUCGCGgACggggACGGGa -3'
miRNA:   3'- ggUGaGGGGGGCGGGUGCgUG----UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 95844 0.67 0.778978
Target:  5'- cCUACUCCCUCCuccuccCCCuuGaCGCGCAGGc -3'
miRNA:   3'- -GGUGAGGGGGGc-----GGGugC-GUGUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.