miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 113539 0.67 0.778978
Target:  5'- gUAC-CCCauCCCGCCCACGCAgAa--- -3'
miRNA:   3'- gGUGaGGG--GGGCGGGUGCGUgUguuc -5'
4040 3' -59.8 NC_001650.1 + 125246 0.67 0.778978
Target:  5'- cCUGCUCCUCCCggGCCCGUGC-CAgAAGc -3'
miRNA:   3'- -GGUGAGGGGGG--CGGGUGCGuGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 145173 0.67 0.778978
Target:  5'- cCUGCaaCCCCCGUCCcCGCGCAguaAAGa -3'
miRNA:   3'- -GGUGagGGGGGCGGGuGCGUGUg--UUC- -5'
4040 3' -59.8 NC_001650.1 + 95844 0.67 0.778978
Target:  5'- cCUACUCCCUCCuccuccCCCuuGaCGCGCAGGc -3'
miRNA:   3'- -GGUGAGGGGGGc-----GGGugC-GUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 73658 0.67 0.770041
Target:  5'- aCCACUCCCUCUcugacccgGCCUACGaguuCAGGg -3'
miRNA:   3'- -GGUGAGGGGGG--------CGGGUGCguguGUUC- -5'
4040 3' -59.8 NC_001650.1 + 70532 0.67 0.770041
Target:  5'- -aGCUCaggagcgCCCCGCCCAUGUuuaucUACAAGa -3'
miRNA:   3'- ggUGAGg------GGGGCGGGUGCGu----GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 24535 0.67 0.770041
Target:  5'- gCCcCUaCCCCCUGgCCGCGCuggACGCGc- -3'
miRNA:   3'- -GGuGA-GGGGGGCgGGUGCG---UGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 148333 0.67 0.770041
Target:  5'- gCCAgUCCgCCCGCCCcGCGUgaaACucCAGGu -3'
miRNA:   3'- -GGUgAGGgGGGCGGG-UGCG---UGu-GUUC- -5'
4040 3' -59.8 NC_001650.1 + 134448 0.67 0.760992
Target:  5'- -uGCUCCCCCCuaUgAgGCACACcGGc -3'
miRNA:   3'- ggUGAGGGGGGcgGgUgCGUGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 119903 0.67 0.760992
Target:  5'- gCACUCggggCCgUCGCCCACGCugaaggcgaACACGAa -3'
miRNA:   3'- gGUGAG----GGgGGCGGGUGCG---------UGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 145845 0.67 0.755512
Target:  5'- uCCACgcccugCCCCCgGUaaucugucuuggaguCCACGUACGCGGc -3'
miRNA:   3'- -GGUGa-----GGGGGgCG---------------GGUGCGUGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 172600 0.67 0.751838
Target:  5'- -gGgUCCCaCCCGCUUGCGCAguUAAGa -3'
miRNA:   3'- ggUgAGGG-GGGCGGGUGCGUguGUUC- -5'
4040 3' -59.8 NC_001650.1 + 155554 0.67 0.751838
Target:  5'- aCGgUCUCCCUGgCCGCGCGCuCGGc -3'
miRNA:   3'- gGUgAGGGGGGCgGGUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 76955 0.67 0.751838
Target:  5'- aCCACcgCCCCCaUGCCCGUGC-C-CGAGg -3'
miRNA:   3'- -GGUGa-GGGGG-GCGGGUGCGuGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 177535 0.67 0.751838
Target:  5'- cCCAC-CCUCCaaaGCCCACcCAacaACAAGa -3'
miRNA:   3'- -GGUGaGGGGGg--CGGGUGcGUg--UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 10828 0.67 0.751838
Target:  5'- cCCAC-CCUCCaaaGCCCACcCAacaACAAGa -3'
miRNA:   3'- -GGUGaGGGGGg--CGGGUGcGUg--UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 5893 0.67 0.751838
Target:  5'- -gGgUCCCaCCCGCUUGCGCAguUAAGa -3'
miRNA:   3'- ggUgAGGG-GGGCGGGUGCGUguGUUC- -5'
4040 3' -59.8 NC_001650.1 + 60911 0.67 0.751838
Target:  5'- cCCcCUCCCCaCuCGCgUGCGCGCGCu-- -3'
miRNA:   3'- -GGuGAGGGG-G-GCGgGUGCGUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 58033 0.67 0.751838
Target:  5'- gCCGCgguUCCUCCCuuuuuuUCCACGCACcCGAGa -3'
miRNA:   3'- -GGUG---AGGGGGGc-----GGGUGCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 135634 0.67 0.751838
Target:  5'- cCCGCgccgUCCCCaCCGCgguacCCACGgUGCACGGGc -3'
miRNA:   3'- -GGUG----AGGGG-GGCG-----GGUGC-GUGUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.