miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 63149 0.67 0.750917
Target:  5'- -gGCgCCCCCCGCgCCGCGgcgucccCGgGCAGGg -3'
miRNA:   3'- ggUGaGGGGGGCG-GGUGC-------GUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 45965 0.67 0.750917
Target:  5'- gCCAgUUCCCCUcucaGCCgCGCGCcgauuggccgagaGCGCAGGg -3'
miRNA:   3'- -GGUgAGGGGGG----CGG-GUGCG-------------UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 112586 0.67 0.742588
Target:  5'- gCCACaCCCCUggCGCCCGgCGCGCcCAc- -3'
miRNA:   3'- -GGUGaGGGGG--GCGGGU-GCGUGuGUuc -5'
4040 3' -59.8 NC_001650.1 + 38129 0.67 0.742588
Target:  5'- gCCAgUUCCCCCUGCUgAC-CAC-CAAGa -3'
miRNA:   3'- -GGU-GAGGGGGGCGGgUGcGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 157299 0.67 0.742588
Target:  5'- gCAC-CUCCCCGCCCcCGCccucGCcCAGGu -3'
miRNA:   3'- gGUGaGGGGGGCGGGuGCG----UGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 131512 0.67 0.742588
Target:  5'- gCCAUgaccCUCUUCGCCCACGCGguCAAc -3'
miRNA:   3'- -GGUGa---GGGGGGCGGGUGCGUguGUUc -5'
4040 3' -59.8 NC_001650.1 + 92957 0.67 0.733249
Target:  5'- aCCG-UCCCCCCGCCCGagaugaGCugGu--- -3'
miRNA:   3'- -GGUgAGGGGGGCGGGUg-----CGugUguuc -5'
4040 3' -59.8 NC_001650.1 + 155178 0.67 0.733249
Target:  5'- gCCAC-CCCCCgCGCCCcgaggGCGUGCGgGu- -3'
miRNA:   3'- -GGUGaGGGGG-GCGGG-----UGCGUGUgUuc -5'
4040 3' -59.8 NC_001650.1 + 158636 0.68 0.723831
Target:  5'- aCCugUCCCCCCcucccUCCAgGCGgcUACGGGg -3'
miRNA:   3'- -GGugAGGGGGGc----GGGUgCGU--GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 148624 0.68 0.723831
Target:  5'- aCC-CUCCCCCagGCgCuCGCACGCGc- -3'
miRNA:   3'- -GGuGAGGGGGg-CGgGuGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 131232 0.68 0.71434
Target:  5'- cCCGgUCCCcgagaCCCugguGCCCaACGCGCAgGAGg -3'
miRNA:   3'- -GGUgAGGG-----GGG----CGGG-UGCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 49385 0.68 0.71434
Target:  5'- uCCAguaugaUCCCCCUGCCCcCGgAgACGGGu -3'
miRNA:   3'- -GGUg-----AGGGGGGCGGGuGCgUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 72969 0.68 0.71434
Target:  5'- gCACaagUCCCCCaugGCCCaguACGCGCGCu-- -3'
miRNA:   3'- gGUG---AGGGGGg--CGGG---UGCGUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 142108 0.68 0.704785
Target:  5'- aCACUCa-CCCGCCCuCGCGCGg--- -3'
miRNA:   3'- gGUGAGggGGGCGGGuGCGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 41040 0.68 0.699024
Target:  5'- ----aCCCCCCGCagcagagggucucgCACGUACACGAGc -3'
miRNA:   3'- ggugaGGGGGGCGg-------------GUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 2414 0.68 0.699024
Target:  5'- cCCACUCCCUaaaucugcccggcaaCCGCCUACcuCACACc-- -3'
miRNA:   3'- -GGUGAGGGG---------------GGCGGGUGc-GUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 169121 0.68 0.699024
Target:  5'- cCCACUCCCUaaaucugcccggcaaCCGCCUACcuCACACc-- -3'
miRNA:   3'- -GGUGAGGGG---------------GGCGGGUGc-GUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 133053 0.68 0.695173
Target:  5'- aCCACgcgcgCCgCCUGCCC-CGCGgGCAc- -3'
miRNA:   3'- -GGUGa----GGgGGGCGGGuGCGUgUGUuc -5'
4040 3' -59.8 NC_001650.1 + 166196 0.68 0.695173
Target:  5'- cCCACcCCaCCCCGCgCCAC-CAcCACAGa -3'
miRNA:   3'- -GGUGaGG-GGGGCG-GGUGcGU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 75112 0.68 0.695173
Target:  5'- uCCAcCUCCCCCaggaCGCCCaggACGCucaGCACGu- -3'
miRNA:   3'- -GGU-GAGGGGG----GCGGG---UGCG---UGUGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.