miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 435 1.09 0.001797
Target:  5'- gCCACUCCCCCCGCCCACGCACACAAGc -3'
miRNA:   3'- -GGUGAGGGGGGCGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 2414 0.68 0.699024
Target:  5'- cCCACUCCCUaaaucugcccggcaaCCGCCUACcuCACACc-- -3'
miRNA:   3'- -GGUGAGGGG---------------GGCGGGUGc-GUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 3648 0.68 0.685514
Target:  5'- gCCGa-CCCCCCGUCCcCGU-CACGGGg -3'
miRNA:   3'- -GGUgaGGGGGGCGGGuGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 5893 0.67 0.751838
Target:  5'- -gGgUCCCaCCCGCUUGCGCAguUAAGa -3'
miRNA:   3'- ggUgAGGG-GGGCGGGUGCGUguGUUC- -5'
4040 3' -59.8 NC_001650.1 + 10828 0.67 0.751838
Target:  5'- cCCAC-CCUCCaaaGCCCACcCAacaACAAGa -3'
miRNA:   3'- -GGUGaGGGGGg--CGGGUGcGUg--UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 12113 0.71 0.530324
Target:  5'- cCCAC-CCCaaaCCC-CCCugGCACACAc- -3'
miRNA:   3'- -GGUGaGGG---GGGcGGGugCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 14005 0.73 0.431037
Target:  5'- cCCACcugCCCgCCCGCCCGCccaccugacccGCGCAgAGGu -3'
miRNA:   3'- -GGUGa--GGG-GGGCGGGUG-----------CGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 16804 0.69 0.666082
Target:  5'- -gGCUgaCCCC-CUCAUGCACACAGGg -3'
miRNA:   3'- ggUGAggGGGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 16941 0.69 0.630889
Target:  5'- -gGCUCCCuaccaauauggcugaCCC-CUCAUGCGCACAGGg -3'
miRNA:   3'- ggUGAGGG---------------GGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 17487 0.68 0.695173
Target:  5'- gCCACgCCCCCUccauuuucucagGCCCaaaugucgACGgGCGCGAGg -3'
miRNA:   3'- -GGUGaGGGGGG------------CGGG--------UGCgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 19231 0.71 0.502285
Target:  5'- aCAUgcagCCCCUCGUUCAC-CACACAGGg -3'
miRNA:   3'- gGUGa---GGGGGGCGGGUGcGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 24535 0.67 0.770041
Target:  5'- gCCcCUaCCCCCUGgCCGCGCuggACGCGc- -3'
miRNA:   3'- -GGuGA-GGGGGGCgGGUGCG---UGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 27082 0.66 0.805036
Target:  5'- cCCACUacaCCagCCUgGCCCAgGCGCuCAGGg -3'
miRNA:   3'- -GGUGA---GG--GGGgCGGGUgCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 29730 0.66 0.830606
Target:  5'- uCUGCUCCCCCUucaggugccugaugGCCCugGUcaaugacuuccucucGgACAAGg -3'
miRNA:   3'- -GGUGAGGGGGG--------------CGGGugCG---------------UgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 30479 0.71 0.530324
Target:  5'- cUCGC-CCaUCCCGCCCGCGgACGCGu- -3'
miRNA:   3'- -GGUGaGG-GGGGCGGGUGCgUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 30948 0.66 0.799921
Target:  5'- cCCGCgcgacgUCCUCCuCCCACauggccaagcuguuuGCGCACGAGg -3'
miRNA:   3'- -GGUGa-----GGGGGGcGGGUG---------------CGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 37905 0.68 0.695173
Target:  5'- gCCGaggaCCCCGCCUACGCGCcCAGc -3'
miRNA:   3'- -GGUgaggGGGGCGGGUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 38129 0.67 0.742588
Target:  5'- gCCAgUUCCCCCUGCUgAC-CAC-CAAGa -3'
miRNA:   3'- -GGU-GAGGGGGGCGGgUGcGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 41040 0.68 0.699024
Target:  5'- ----aCCCCCCGCagcagagggucucgCACGUACACGAGc -3'
miRNA:   3'- ggugaGGGGGGCGg-------------GUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 45965 0.67 0.750917
Target:  5'- gCCAgUUCCCCUcucaGCCgCGCGCcgauuggccgagaGCGCAGGg -3'
miRNA:   3'- -GGUgAGGGGGG----CGG-GUGCG-------------UGUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.