miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 48915 0.66 0.796483
Target:  5'- gUCACUCCCgCCGCCCugACGguggucaACACcucuGAGg -3'
miRNA:   3'- -GGUGAGGGgGGCGGG--UGCg------UGUG----UUC- -5'
4040 3' -59.8 NC_001650.1 + 49224 0.66 0.829805
Target:  5'- cUCAC-CCCCCUGCgggcgcucgaCUACGUGCACGu- -3'
miRNA:   3'- -GGUGaGGGGGGCG----------GGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 49385 0.68 0.71434
Target:  5'- uCCAguaugaUCCCCCUGCCCcCGgAgACGGGu -3'
miRNA:   3'- -GGUg-----AGGGGGGCGGGuGCgUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 50718 0.69 0.626974
Target:  5'- cUCGCUCucgccuuugCCCUCGCCCGCGCuuuCGCu-- -3'
miRNA:   3'- -GGUGAG---------GGGGGCGGGUGCGu--GUGuuc -5'
4040 3' -59.8 NC_001650.1 + 51002 0.7 0.607413
Target:  5'- cCCGCUCCCagCC-CCCACGC-CGCu-- -3'
miRNA:   3'- -GGUGAGGGg-GGcGGGUGCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 51225 0.66 0.813445
Target:  5'- cCCGCgCCCCCUcccaGCgugucucuaucCCGCGCGgGCGAGc -3'
miRNA:   3'- -GGUGaGGGGGG----CG-----------GGUGCGUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 51405 0.75 0.321955
Target:  5'- cCCGCgcaUCCCCauggugaaccugCUGCCCGCGCGCuACAGGg -3'
miRNA:   3'- -GGUG---AGGGG------------GGCGGGUGCGUG-UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 52547 0.66 0.813445
Target:  5'- gCAC-CUCCaCCGCCCcccucagggaggGgGCGCGCAGGc -3'
miRNA:   3'- gGUGaGGGG-GGCGGG------------UgCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 54184 0.66 0.787795
Target:  5'- cCCGCUCCCCCuCGUcgaUCugGCcCuuGAGg -3'
miRNA:   3'- -GGUGAGGGGG-GCG---GGugCGuGugUUC- -5'
4040 3' -59.8 NC_001650.1 + 54199 0.66 0.813445
Target:  5'- -aGCUCCCgggCCGCCCAgGCu--CAGGg -3'
miRNA:   3'- ggUGAGGGg--GGCGGGUgCGuguGUUC- -5'
4040 3' -59.8 NC_001650.1 + 54229 0.69 0.665107
Target:  5'- cCCGCgCCgCCCUcagcagccucaggGCCCGCGC-CACGGGc -3'
miRNA:   3'- -GGUGaGG-GGGG-------------CGGGUGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 55960 0.7 0.607413
Target:  5'- cCCAC-CCCCUCgggcacggGCCCGuagGCGCGCAGGg -3'
miRNA:   3'- -GGUGaGGGGGG--------CGGGUg--CGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 57398 0.72 0.448308
Target:  5'- gCgGCUCCCCCacccccugcgGCCCGgGCGCGCAc- -3'
miRNA:   3'- -GgUGAGGGGGg---------CGGGUgCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 57461 0.66 0.796483
Target:  5'- cCCAUUCCCCCgGgCCCcuCGC-CGCu-- -3'
miRNA:   3'- -GGUGAGGGGGgC-GGGu-GCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 57750 0.7 0.558914
Target:  5'- uCgACggaCCCCCGuccCCCACGCGCGCGc- -3'
miRNA:   3'- -GgUGag-GGGGGC---GGGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 58033 0.67 0.751838
Target:  5'- gCCGCgguUCCUCCCuuuuuuUCCACGCACcCGAGa -3'
miRNA:   3'- -GGUG---AGGGGGGc-----GGGUGCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 58508 0.78 0.224171
Target:  5'- gCCcCUCCUCUgGCCCAUGgCACACAGGg -3'
miRNA:   3'- -GGuGAGGGGGgCGGGUGC-GUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 60911 0.67 0.751838
Target:  5'- cCCcCUCCCCaCuCGCgUGCGCGCGCu-- -3'
miRNA:   3'- -GGuGAGGGG-G-GCGgGUGCGUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 62079 0.68 0.675814
Target:  5'- cCCcCUCCCgCCGCCCcCGCcCcCGAGc -3'
miRNA:   3'- -GGuGAGGGgGGCGGGuGCGuGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 62423 0.68 0.69421
Target:  5'- gCCGCUCCCCCCuucCCCGuuaccccCGC-CGCcGGg -3'
miRNA:   3'- -GGUGAGGGGGGc--GGGU-------GCGuGUGuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.