Results 41 - 60 of 166 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 63009 | 0.66 | 0.829805 |
Target: 5'- aCCGCUCCaggaaggccuCCaCCGUCCGCcggGCGCACc-- -3' miRNA: 3'- -GGUGAGG----------GG-GGCGGGUG---CGUGUGuuc -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 63149 | 0.67 | 0.750917 |
Target: 5'- -gGCgCCCCCCGCgCCGCGgcgucccCGgGCAGGg -3' miRNA: 3'- ggUGaGGGGGGCG-GGUGC-------GUgUGUUC- -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 67112 | 0.72 | 0.483957 |
Target: 5'- -aGCUgCCCCCGcCCCugGC-CGCGAa -3' miRNA: 3'- ggUGAgGGGGGC-GGGugCGuGUGUUc -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 67164 | 0.69 | 0.666082 |
Target: 5'- ---aUCUCCCCGCCCGCGU-C-CGAGa -3' miRNA: 3'- ggugAGGGGGGCGGGUGCGuGuGUUC- -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 68270 | 0.71 | 0.52091 |
Target: 5'- gUCGCUCCUCCC-CCgGCGCAC-CAGc -3' miRNA: 3'- -GGUGAGGGGGGcGGgUGCGUGuGUUc -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 68362 | 0.7 | 0.568543 |
Target: 5'- gCACUCagCCaCCGCCCAacugcccucuggUGUACACAGGa -3' miRNA: 3'- gGUGAGg-GG-GGCGGGU------------GCGUGUGUUC- -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 69095 | 0.76 | 0.26951 |
Target: 5'- cUCAcCUCCugguCCCCGCCCGCGCACgACAu- -3' miRNA: 3'- -GGU-GAGG----GGGGCGGGUGCGUG-UGUuc -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 70404 | 0.68 | 0.685514 |
Target: 5'- gCACUCCUCCCaggagacgGCCCugGaCGuCACAGa -3' miRNA: 3'- gGUGAGGGGGG--------CGGGugC-GU-GUGUUc -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 70532 | 0.67 | 0.770041 |
Target: 5'- -aGCUCaggagcgCCCCGCCCAUGUuuaucUACAAGa -3' miRNA: 3'- ggUGAGg------GGGGCGGGUGCGu----GUGUUC- -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 71376 | 0.66 | 0.805036 |
Target: 5'- cCCAa-CCCCUgCGCCgGCGCGCucCAGGc -3' miRNA: 3'- -GGUgaGGGGG-GCGGgUGCGUGu-GUUC- -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 72273 | 0.66 | 0.796483 |
Target: 5'- cCCGCgUCCuggaugcgCCCCGCgC-CGCACACcAGa -3' miRNA: 3'- -GGUG-AGG--------GGGGCGgGuGCGUGUGuUC- -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 72969 | 0.68 | 0.71434 |
Target: 5'- gCACaagUCCCCCaugGCCCaguACGCGCGCu-- -3' miRNA: 3'- gGUG---AGGGGGg--CGGG---UGCGUGUGuuc -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 73129 | 0.66 | 0.829805 |
Target: 5'- aCCGC-CgCCCUCGCgCCugGCgccGCugGAGc -3' miRNA: 3'- -GGUGaG-GGGGGCG-GGugCG---UGugUUC- -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 73285 | 0.66 | 0.829805 |
Target: 5'- -aGCUCCaUCCUgguGCCCGCGCACGu--- -3' miRNA: 3'- ggUGAGG-GGGG---CGGGUGCGUGUguuc -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 73658 | 0.67 | 0.770041 |
Target: 5'- aCCACUCCCUCUcugacccgGCCUACGaguuCAGGg -3' miRNA: 3'- -GGUGAGGGGGG--------CGGGUGCguguGUUC- -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 75112 | 0.68 | 0.695173 |
Target: 5'- uCCAcCUCCCCCaggaCGCCCaggACGCucaGCACGu- -3' miRNA: 3'- -GGU-GAGGGGG----GCGGG---UGCG---UGUGUuc -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 75661 | 0.69 | 0.646549 |
Target: 5'- uCCGCUCCCCCUccuccCCCAgcCGCgGCGgGAGg -3' miRNA: 3'- -GGUGAGGGGGGc----GGGU--GCG-UGUgUUC- -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 75722 | 0.74 | 0.353903 |
Target: 5'- aCCcCUCCaCCCCGuccagguagagggacCCCACGCGCACGu- -3' miRNA: 3'- -GGuGAGG-GGGGC---------------GGGUGCGUGUGUuc -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 76031 | 0.66 | 0.821704 |
Target: 5'- aCGCgccagCUUCuuGCCCACGUAgGCAGa -3' miRNA: 3'- gGUGa----GGGGggCGGGUGCGUgUGUUc -5' |
|||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 76955 | 0.67 | 0.751838 |
Target: 5'- aCCACcgCCCCCaUGCCCGUGC-C-CGAGg -3' miRNA: 3'- -GGUGa-GGGGG-GCGGGUGCGuGuGUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home