miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 142888 0.66 0.829805
Target:  5'- gCCGCcgCCgCCCCgGCCCgugcagccgGCGCGCuCGGGc -3'
miRNA:   3'- -GGUGa-GG-GGGG-CGGG---------UGCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 142108 0.68 0.704785
Target:  5'- aCACUCa-CCCGCCCuCGCGCGg--- -3'
miRNA:   3'- gGUGAGggGGGCGGGuGCGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 140204 0.69 0.656324
Target:  5'- gCCGCUUCCCCCaGCCgUAUGCACc---- -3'
miRNA:   3'- -GGUGAGGGGGG-CGG-GUGCGUGuguuc -5'
4040 3' -59.8 NC_001650.1 + 137261 0.66 0.829805
Target:  5'- gCCACaggUCCaCCgCCGuCCCGgGCugGCAGa -3'
miRNA:   3'- -GGUG---AGG-GG-GGC-GGGUgCGugUGUUc -5'
4040 3' -59.8 NC_001650.1 + 136442 0.77 0.234861
Target:  5'- gCAgUCCuCCUCGCCCACGCgcaggcccucGCACAGGg -3'
miRNA:   3'- gGUgAGG-GGGGCGGGUGCG----------UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 136134 0.7 0.568543
Target:  5'- aCCGC-CCUgcaCCUGUCCACGCACAUg-- -3'
miRNA:   3'- -GGUGaGGG---GGGCGGGUGCGUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 136064 0.67 0.778978
Target:  5'- gUACUCCCCCaGCCC-CGCGgcCGCc-- -3'
miRNA:   3'- gGUGAGGGGGgCGGGuGCGU--GUGuuc -5'
4040 3' -59.8 NC_001650.1 + 135634 0.67 0.751838
Target:  5'- cCCGCgccgUCCCCaCCGCgguacCCACGgUGCACGGGc -3'
miRNA:   3'- -GGUG----AGGGG-GGCG-----GGUGC-GUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 134448 0.67 0.760992
Target:  5'- -uGCUCCCCCCuaUgAgGCACACcGGc -3'
miRNA:   3'- ggUGAGGGGGGcgGgUgCGUGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 134318 0.66 0.829805
Target:  5'- cCCGuCUUCCCCC-CCgGCGCccccCGCGGGc -3'
miRNA:   3'- -GGU-GAGGGGGGcGGgUGCGu---GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 133936 0.68 0.695173
Target:  5'- gCCGuCUCCCCcgccgCCGCCCGCucccGgGCGCAGa -3'
miRNA:   3'- -GGU-GAGGGG-----GGCGGGUG----CgUGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 133227 0.76 0.287684
Target:  5'- cCCGCgcccccgUCCCCCCGCagcuCGCACACGGGc -3'
miRNA:   3'- -GGUG-------AGGGGGGCGggu-GCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 133053 0.68 0.695173
Target:  5'- aCCACgcgcgCCgCCUGCCC-CGCGgGCAc- -3'
miRNA:   3'- -GGUGa----GGgGGGCGGGuGCGUgUGUuc -5'
4040 3' -59.8 NC_001650.1 + 131987 0.66 0.821704
Target:  5'- aCGCUgCCCCCGCUggaCAUGgGCcuCAAGa -3'
miRNA:   3'- gGUGAgGGGGGCGG---GUGCgUGu-GUUC- -5'
4040 3' -59.8 NC_001650.1 + 131512 0.67 0.742588
Target:  5'- gCCAUgaccCUCUUCGCCCACGCGguCAAc -3'
miRNA:   3'- -GGUGa---GGGGGGCGGGUGCGUguGUUc -5'
4040 3' -59.8 NC_001650.1 + 131232 0.68 0.71434
Target:  5'- cCCGgUCCCcgagaCCCugguGCCCaACGCGCAgGAGg -3'
miRNA:   3'- -GGUgAGGG-----GGG----CGGG-UGCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 130585 0.66 0.787795
Target:  5'- -aGCUCCCUCgGCCaAUGagaGCGCAGGg -3'
miRNA:   3'- ggUGAGGGGGgCGGgUGCg--UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 129252 0.71 0.502285
Target:  5'- cCCACUCCCugguggCCCGCuCCGC-CGC-CAAGg -3'
miRNA:   3'- -GGUGAGGG------GGGCG-GGUGcGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 129124 0.77 0.257523
Target:  5'- aCACUCCCCCgCGCCCGgggccgaGgACACGGGg -3'
miRNA:   3'- gGUGAGGGGG-GCGGGUg------CgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 128104 0.71 0.52091
Target:  5'- aCCACcaaaCCCCaucguCGCCCACGCGCcCAAc -3'
miRNA:   3'- -GGUGa---GGGGg----GCGGGUGCGUGuGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.