miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 127947 0.69 0.623058
Target:  5'- aCCACcCCCCCCGUCCuuCGCccaacccccucucCGCGAGc -3'
miRNA:   3'- -GGUGaGGGGGGCGGGu-GCGu------------GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 126473 0.77 0.257523
Target:  5'- gCUACUCCCCCguCGCCCACcC-CGCGAGg -3'
miRNA:   3'- -GGUGAGGGGG--GCGGGUGcGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 126268 0.69 0.656324
Target:  5'- gCCGCgCCUCCCGCCCA-GCugAgGGu -3'
miRNA:   3'- -GGUGaGGGGGGCGGGUgCGugUgUUc -5'
4040 3' -59.8 NC_001650.1 + 125580 0.68 0.685514
Target:  5'- aCCACcugCCCCCCaacCCCACccuggagaugcuGCACACGu- -3'
miRNA:   3'- -GGUGa--GGGGGGc--GGGUG------------CGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 125246 0.67 0.778978
Target:  5'- cCUGCUCCUCCCggGCCCGUGC-CAgAAGc -3'
miRNA:   3'- -GGUGAGGGGGG--CGGGUGCGuGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 123454 0.71 0.511563
Target:  5'- cCCGCg-CCCCUGCCCA-GCACcuACGGGg -3'
miRNA:   3'- -GGUGagGGGGGCGGGUgCGUG--UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 122912 0.74 0.389626
Target:  5'- aCCugUCCCagcuCCagauaGCCCACGCcCACGGGg -3'
miRNA:   3'- -GGugAGGG----GGg----CGGGUGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 121293 0.68 0.695173
Target:  5'- gCCAcCUgUCCCCGCCCgagauagaggGCGUGCGCGc- -3'
miRNA:   3'- -GGU-GAgGGGGGCGGG----------UGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 120802 0.69 0.636763
Target:  5'- gUugUCCuCCUCcCCCAUGCACAgAAGg -3'
miRNA:   3'- gGugAGG-GGGGcGGGUGCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 120726 0.68 0.689383
Target:  5'- uUCACgCCCCCCGCCUcccuggugacccucaGgGCAUAgAGGa -3'
miRNA:   3'- -GGUGaGGGGGGCGGG---------------UgCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 119903 0.67 0.760992
Target:  5'- gCACUCggggCCgUCGCCCACGCugaaggcgaACACGAa -3'
miRNA:   3'- gGUGAG----GGgGGCGGGUGCG---------UGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 119083 0.66 0.787795
Target:  5'- uCCucCUCCCuCUCGgCCAUGUAgACGGGg -3'
miRNA:   3'- -GGu-GAGGG-GGGCgGGUGCGUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 118754 0.71 0.52091
Target:  5'- aCCGCcCCCCgCCGCCCcccuccucgguGCGCAgCACGuAGg -3'
miRNA:   3'- -GGUGaGGGG-GGCGGG-----------UGCGU-GUGU-UC- -5'
4040 3' -59.8 NC_001650.1 + 117814 0.75 0.321255
Target:  5'- aCC-CUCCCCCuCGCCCcucgcccucaggcACGCGgGCAGGc -3'
miRNA:   3'- -GGuGAGGGGG-GCGGG-------------UGCGUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 117710 0.66 0.805036
Target:  5'- -gACggCCgCCCGCaCCGcCGCGCGCAGc -3'
miRNA:   3'- ggUGa-GGgGGGCG-GGU-GCGUGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 117557 0.7 0.591811
Target:  5'- -uGCUCCCCCgggacggcagcaucaCGCCCAgGCACAa--- -3'
miRNA:   3'- ggUGAGGGGG---------------GCGGGUgCGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 117473 0.71 0.549331
Target:  5'- cCCACUCCCCCaagauagGCUCcugcgGCGC-CGCGAGc -3'
miRNA:   3'- -GGUGAGGGGGg------CGGG-----UGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 117344 0.7 0.578214
Target:  5'- cCgGCUCgCCCCCGCCCccgGCGCcuccCGCGGc -3'
miRNA:   3'- -GgUGAG-GGGGGCGGG---UGCGu---GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 114988 0.85 0.079661
Target:  5'- uCUACUCgCCCCCggccuccagcGCCCGCGCGCACGAGu -3'
miRNA:   3'- -GGUGAG-GGGGG----------CGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 114193 0.66 0.821704
Target:  5'- -aGCUCgUCCaCCGCCCGCuccaGgACGCAGGa -3'
miRNA:   3'- ggUGAG-GGG-GGCGGGUG----CgUGUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.