miRNA display CGI


Results 81 - 100 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 113539 0.67 0.778978
Target:  5'- gUAC-CCCauCCCGCCCACGCAgAa--- -3'
miRNA:   3'- gGUGaGGG--GGGCGGGUGCGUgUguuc -5'
4040 3' -59.8 NC_001650.1 + 112586 0.67 0.742588
Target:  5'- gCCACaCCCCUggCGCCCGgCGCGCcCAc- -3'
miRNA:   3'- -GGUGaGGGGG--GCGGGU-GCGUGuGUuc -5'
4040 3' -59.8 NC_001650.1 + 112365 0.69 0.666082
Target:  5'- aCUuCUCCUCCUGCCCGUGCAC-CAu- -3'
miRNA:   3'- -GGuGAGGGGGGCGGGUGCGUGuGUuc -5'
4040 3' -59.8 NC_001650.1 + 112237 0.69 0.666082
Target:  5'- -gACggCCgCCCCGCCCAggUGCugGCAGa -3'
miRNA:   3'- ggUGa-GG-GGGGCGGGU--GCGugUGUUc -5'
4040 3' -59.8 NC_001650.1 + 111491 0.77 0.261668
Target:  5'- gCCACccccgggcuggugaUCCCCgCCG-CCGCGCGCACGGGg -3'
miRNA:   3'- -GGUG--------------AGGGG-GGCgGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 109167 0.69 0.626974
Target:  5'- gCCug-CCCCCgGCCCGagugggacgagcCGUACGCGGGg -3'
miRNA:   3'- -GGugaGGGGGgCGGGU------------GCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 105454 0.66 0.826584
Target:  5'- cCCGCUgcCgCCCCCGaagaaagcaccuaUCACGCGCACGu- -3'
miRNA:   3'- -GGUGA--G-GGGGGCg------------GGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 105373 0.66 0.821704
Target:  5'- aC-CUCCcguCCCCGUCCGCGa--GCAGGg -3'
miRNA:   3'- gGuGAGG---GGGGCGGGUGCgugUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 105315 0.68 0.685514
Target:  5'- aCCAagcgCCUCCCGUCCccgcuGCGCACcuuCAGGg -3'
miRNA:   3'- -GGUga--GGGGGGCGGG-----UGCGUGu--GUUC- -5'
4040 3' -59.8 NC_001650.1 + 105111 0.7 0.578214
Target:  5'- gCC-CUCCUCCCGCCCGCcgagcggccGCGCcCGGa -3'
miRNA:   3'- -GGuGAGGGGGGCGGGUG---------CGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 103704 0.71 0.52091
Target:  5'- -gGC-CUCCCCGuCCCAC-CACACGAGc -3'
miRNA:   3'- ggUGaGGGGGGC-GGGUGcGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 103524 0.69 0.621101
Target:  5'- gUCGCUCCccggguccguguagcCCCCGgCCACGUugGCGu- -3'
miRNA:   3'- -GGUGAGG---------------GGGGCgGGUGCGugUGUuc -5'
4040 3' -59.8 NC_001650.1 + 103315 0.66 0.796483
Target:  5'- uCCACUCgguCCCCCGUCUcCGUgACGCcAGa -3'
miRNA:   3'- -GGUGAG---GGGGGCGGGuGCG-UGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 101796 0.66 0.821704
Target:  5'- cCCACggccgUCCCCUGCCa--GUugGCGGGc -3'
miRNA:   3'- -GGUGa----GGGGGGCGGgugCGugUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 95844 0.67 0.778978
Target:  5'- cCUACUCCCUCCuccuccCCCuuGaCGCGCAGGc -3'
miRNA:   3'- -GGUGAGGGGGGc-----GGGugC-GUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 95810 0.66 0.787795
Target:  5'- gUACUCCCCCUcCCCGcCGC-CACc-- -3'
miRNA:   3'- gGUGAGGGGGGcGGGU-GCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 95716 0.69 0.646549
Target:  5'- cCCGCUUCCuCCCGCCCGgcguccccgcccCGCcCGgAGGa -3'
miRNA:   3'- -GGUGAGGG-GGGCGGGU------------GCGuGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 95527 0.7 0.607413
Target:  5'- cCCGCUCCa-UCGCCCGCGC-CGCc-- -3'
miRNA:   3'- -GGUGAGGggGGCGGGUGCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 95501 0.68 0.685514
Target:  5'- -gGCUCCCCCUcCCCGgCGCcCGCAc- -3'
miRNA:   3'- ggUGAGGGGGGcGGGU-GCGuGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 94737 0.66 0.796483
Target:  5'- cCCACgcgaaCCCCGCCUcgGCGgcccaGCGCAGGa -3'
miRNA:   3'- -GGUGagg--GGGGCGGG--UGCg----UGUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.