miRNA display CGI


Results 101 - 120 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 93231 0.66 0.796483
Target:  5'- gCCACggCCgaaaCgCGCCCGCGCGCgACAu- -3'
miRNA:   3'- -GGUGa-GGg---GgGCGGGUGCGUG-UGUuc -5'
4040 3' -59.8 NC_001650.1 + 92957 0.67 0.733249
Target:  5'- aCCG-UCCCCCCGCCCGagaugaGCugGu--- -3'
miRNA:   3'- -GGUgAGGGGGGCGGGUg-----CGugUguuc -5'
4040 3' -59.8 NC_001650.1 + 85759 0.66 0.821704
Target:  5'- uCCACaCCCUCCGCCCcCcuCACACc-- -3'
miRNA:   3'- -GGUGaGGGGGGCGGGuGc-GUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 82298 0.69 0.636763
Target:  5'- cCCGCUCgccccacccgCCCCCGUUCGCcCACuACGAGg -3'
miRNA:   3'- -GGUGAG----------GGGGGCGGGUGcGUG-UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 81828 0.71 0.502285
Target:  5'- cCCGCUCCCCCCuGCUgcUGCAgCACGGa -3'
miRNA:   3'- -GGUGAGGGGGG-CGGguGCGU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 78839 0.66 0.787795
Target:  5'- -aGCcCCCCCUGCUCGCGgACggggACGGGa -3'
miRNA:   3'- ggUGaGGGGGGCGGGUGCgUG----UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 76955 0.67 0.751838
Target:  5'- aCCACcgCCCCCaUGCCCGUGC-C-CGAGg -3'
miRNA:   3'- -GGUGa-GGGGG-GCGGGUGCGuGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 76031 0.66 0.821704
Target:  5'- aCGCgccagCUUCuuGCCCACGUAgGCAGa -3'
miRNA:   3'- gGUGa----GGGGggCGGGUGCGUgUGUUc -5'
4040 3' -59.8 NC_001650.1 + 75722 0.74 0.353903
Target:  5'- aCCcCUCCaCCCCGuccagguagagggacCCCACGCGCACGu- -3'
miRNA:   3'- -GGuGAGG-GGGGC---------------GGGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 75661 0.69 0.646549
Target:  5'- uCCGCUCCCCCUccuccCCCAgcCGCgGCGgGAGg -3'
miRNA:   3'- -GGUGAGGGGGGc----GGGU--GCG-UGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 75112 0.68 0.695173
Target:  5'- uCCAcCUCCCCCaggaCGCCCaggACGCucaGCACGu- -3'
miRNA:   3'- -GGU-GAGGGGG----GCGGG---UGCG---UGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 73658 0.67 0.770041
Target:  5'- aCCACUCCCUCUcugacccgGCCUACGaguuCAGGg -3'
miRNA:   3'- -GGUGAGGGGGG--------CGGGUGCguguGUUC- -5'
4040 3' -59.8 NC_001650.1 + 73285 0.66 0.829805
Target:  5'- -aGCUCCaUCCUgguGCCCGCGCACGu--- -3'
miRNA:   3'- ggUGAGG-GGGG---CGGGUGCGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 73129 0.66 0.829805
Target:  5'- aCCGC-CgCCCUCGCgCCugGCgccGCugGAGc -3'
miRNA:   3'- -GGUGaG-GGGGGCG-GGugCG---UGugUUC- -5'
4040 3' -59.8 NC_001650.1 + 72969 0.68 0.71434
Target:  5'- gCACaagUCCCCCaugGCCCaguACGCGCGCu-- -3'
miRNA:   3'- gGUG---AGGGGGg--CGGG---UGCGUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 72273 0.66 0.796483
Target:  5'- cCCGCgUCCuggaugcgCCCCGCgC-CGCACACcAGa -3'
miRNA:   3'- -GGUG-AGG--------GGGGCGgGuGCGUGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 71376 0.66 0.805036
Target:  5'- cCCAa-CCCCUgCGCCgGCGCGCucCAGGc -3'
miRNA:   3'- -GGUgaGGGGG-GCGGgUGCGUGu-GUUC- -5'
4040 3' -59.8 NC_001650.1 + 70532 0.67 0.770041
Target:  5'- -aGCUCaggagcgCCCCGCCCAUGUuuaucUACAAGa -3'
miRNA:   3'- ggUGAGg------GGGGCGGGUGCGu----GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 70404 0.68 0.685514
Target:  5'- gCACUCCUCCCaggagacgGCCCugGaCGuCACAGa -3'
miRNA:   3'- gGUGAGGGGGG--------CGGGugC-GU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 69095 0.76 0.26951
Target:  5'- cUCAcCUCCugguCCCCGCCCGCGCACgACAu- -3'
miRNA:   3'- -GGU-GAGG----GGGGCGGGUGCGUG-UGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.